Migrate people.html to data-driven _data/people.yml; add scholar/bluesky/orcid icons

.pre-commit-config.yaml

@@ -21,6 +21,11 @@ repos:
         entry: svgo --multipass
         language: system
         types: [svg]
+        # plab_logo_dark.svg has paths drawn outside its viewBox; svgo's
+        # optimization stripped attributes (clipPath / overflow handling)
+        # that kept that content visible when scaled. Skip it so the home
+        # page background renders correctly.
+        exclude: '^images/plab_logo_dark\.svg$'
 
       # Runs after the compression hooks so it sees post-compression sizes.
       - id: image-size-cap

_data/people.yml

@@ -0,0 +1,317 @@
+# Lab people data, rendered by people.html.
+#
+# One list per role. Each entry has an optional `current` flag:
+#   current: true   (default — present member, renders as rich card)
+#   current: false  (alumni — renders as a list item under "Former members")
+#
+# Moving someone to alumni is a one-line edit: set `current: false`,
+# then optionally add `years` and `outcome`. You can keep their image,
+# desc, and social links — the template only renders those for current
+# members, but preserving them keeps history available for later.
+#
+# Card schema (used when current is true or absent):
+#   name: string                     (required)
+#   title: string                    (optional)
+#   image: string                    (required, path under /images/)
+#   desc: string                     (required, supports inline HTML)
+#   site: string                     (optional, personal homepage)
+#   github: string                   (optional)
+#   email: string                    (optional)
+#   linkedin: string                 (optional)
+#   scholar: string                  (optional, Google Scholar URL)
+#   bluesky: string                  (optional)
+#   orcid: string                    (optional)
+#
+# Alumni-list schema (used when current is false):
+#   name: string                     (required)
+#   url: string                      (optional, what to wrap the name in)
+#   years: string                    (optional, e.g. "2017" or "2015-2016")
+#   notes: string                    (optional, HTML-safe parenthetical)
+#   outcome: string                  (optional, HTML-safe trailing "→ ..." text)
+
+pi:
+  name: John Pearson
+  image: /images/john.png
+  site: http://jmxpearson.com
+  github: https://github.com/jmxpearson
+  email: john.pearson@duke.edu
+  linkedin: https://www.linkedin.com/in/jmxpearson
+  bluesky: https://bsky.app/profile/jmxpearson.bsky.social
+  desc: >-
+    John earned his bachelor's degree in physics and math from the University
+    of Kentucky and his PhD in physics from Princeton. He became a neuroscientist
+    at Duke, where he did his postdoctoral training with Michael Platt, working
+    on the neurobiology of reward and decision-making. From 2015 to 2018, he was
+    an Assistant Research Professor in the Duke Institute for Brain Sciences. In
+    2018, he moved back to the School of Medicine as an Assistant Professor in
+    the Department of Biostatistics & Bioinformatics, and in 2022, he moved
+    to the Department of Neurobiology, where he was promoted to Associate
+    Professor in 2025. In addition, he maintains secondary appointments in the
+    departments of Biostatics & Bioinformatics, Psychology &
+    Neuroscience, and Electrical and Computer Engineering.
+    (<a href="https://www.dropbox.com/scl/fi/o05n1v0skl5el9w938oca/john_pearson_cv.pdf?rlkey=wickra8h33u8hfsr40l0jdhxf&amp;st=8buq1yz2&amp;dl=0">cv</a>)
+
+postdocs:
+  - name: Jeff MacInnes
+    current: false
+    url: http://www.jeffmacinnes.com/
+    years: 2017
+    notes: joint with Elizabeth Johnson
+    outcome: University of Washington (postdoc)
+
+  - name: Chintan Oza
+    current: false
+    years: 2015-2016
+    notes: 'joint with <a href="https://bme.duke.edu/faculty/warren-grill">Warren Grill</a>'
+    outcome: Consulting (L.E.K.)
+
+  - name: Anne Draelos
+    current: false
+    url: https://draelos.github.io
+    years: 2018-2022
+    outcome: Assistant Professor, University of Michigan
+
+  - name: Scott Smyre
+    current: false
+    years: 2023-2024
+    outcome: Research Scientist, Wake Forest University
+
+  - name: Seth Madlon-Kay
+    current: false
+    years: 2019-2025
+
+graduate_students:
+  - name: Trevor Alston
+    title: Neurobiology PhD Student
+    current: true
+    image: /images/Trevor.jpg
+    github: https://github.com/Trevorules
+    email: trevor.alston@duke.edu
+    linkedin: https://www.linkedin.com/in/trevor-alston
+    desc: >-
+      Trevor is a sixth-year Neurobiology graduate student at Duke
+      University. He holds two Biomedical Engineering Degrees; he received
+      his BS degree from Rutgers University and his MS degree from
+      Northwestern University. His research interest is in Neuroengineering
+      and brain-related technologies. Outside of the lab he likes hanging
+      out with friends, playing games, and watching TV.
+
+  - name: David St-Amand
+    title: Neurobiology Graduate Student
+    image: https://scholars.duke.edu/file/i6468953/image_6468953.JPG
+    scholar: https://scholar.google.com/citations?user=Bc4NeD0AAAAJ
+    github: https://github.com/DavidStA95
+    email: david.st-amand@duke.edu
+    desc: >-
+      David is a third-year graduate student in Neurobiology. He graduated
+      from McGill University, where he received his BS in Psychology and
+      his MS in Neuroscience. His research investigates how efficient
+      coding models can help us understand how information is computed in
+      the retina. Outside the lab, he likes to work out and play games.
+
+  - name: Shiyang Pan
+    title: Electrical and Computer Engineering PhD Student
+    image: /images/shiyang.jpg
+    site: https://waaaaaterfall.github.io
+    github: https://github.com/WaAaaAterfall
+    email: shiyang.pan@duke.edu
+    linkedin: https://www.linkedin.com/in/shiyangpan
+    desc: >-
+      Shiyang is a graduate student in Electrical &amp; Computer Engineering
+      at Duke. She received her Bsc in Applied Mathematics from University
+      of Liverpool and Xi'an Jiaotong-Liverpool University. Her research
+      focuses on developing computational models and real-time methods to
+      understand the activity of large-scale neural populations. When not
+      doing research she enjoys music, reading, and creative writing.
+
+  - name: Caitlin Lewis
+    title: Electrical &amp; Computer Engineering PhD Student
+    image: /images/caitlin.jpg
+    github: https://github.com/clewis7
+    email: caitlin.lewis@duke.edu
+    linkedin: https://www.linkedin.com/in/caitlinllewis/
+    desc: >-
+      Caitlin is a second-year graduate student in Electrical &amp; Computer
+      Engineering at Duke. She received her B.S. in Computer Science and
+      Statistics from the University of North Carolina at Chapel Hill. Her
+      research focuses on developing computational models and open-source
+      software tools for real-time analysis and visualization of large-scale
+      neural data. Outside of the lab, she enjoys reading and playing
+      pickleball with friends.
+
+  # Former graduate students
+  - name: Kelsey McDonald
+    current: false
+    years: 2016-2021
+    outcome: Data Scientist, Labcorp Drug Development
+
+  - name: Robert Gramer
+    current: false
+    url: https://www.massgeneral.org/neurosurgery/doctors/current-residents
+    years: 2016-2017
+    notes: 3rd year medical student
+    outcome: Neurosurgical Resident, Massachusetts General Hospital
+
+  - name: Achint Kumar
+    current: false
+    url: https://achintzeus1994.github.io
+    years: 2021-2022
+
+  - name: Na Young Jun
+    current: false
+    years: 2017-2022
+    outcome: Meta Reality Labs
+
+  - name: Pranjal Gupta
+    current: false
+    years: 2018-2024
+    outcome: data scientist
+
+  - name: Kevin O'Neill
+    current: false
+    url: https://kevingoneill.github.io
+    years: 2018-2024
+    outcome: postdoc, University College London
+
+  - name: Raphael Geddert
+    current: false
+    years: 2019-2024
+    outcome: data scientist, Gilead Sciences
+
+  - name: Daniela de Albuquerque
+    current: false
+    url: https://dannyfa.github.io/
+    years: 2020-2025
+    outcome: Diagnostic Radiology Residency, University of Washington
+
+  - name: Liz O'Gorman
+    current: false
+    years: 2022-2025
+
+  - name: Miles Martinez
+    current: false
+    years: 2020-2026
+    title: Electrical and Computer Engineering PhD Candidate
+    image: /images/miles.jpg
+    github: https://github.com/mdmarti
+    email: miles.martinez@duke.edu
+    linkedin: https://www.linkedin.com/in/miles-martinez-00a496123/
+    desc: >-
+      Miles is a fifth-year graduate student in Electrical and Computer
+      Engineering. He entered Duke through the CNAP program. He currently
+      develops and applies computational methods to understand the neural
+      bases of natural learning. When not doing research, he loves getting
+      outside and hiking or rock climbing — unless it's too cold, in which
+      case you can find him indoors cooking or playing games.
+    outcome: NYU postdoc with Cristina Savin
+
+  - name: Ziyi Gong
+    current: false
+    years: 2024-2026
+    title: Neurobiology Graduate Student
+    image: /images/gong.png
+    scholar: https://scholar.google.com/citations?user=zOKHGPgAAAAJ
+    github: https://github.com/gongziyida
+    email: ziyi.gong@duke.edu
+    desc: >-
+      Ziyi is a fourth-year PhD candidate in Neurobiology. He received his
+      B.S. in Computer Science with minors in Mathematics and Neuroscience
+      from the University of Pittsburgh. He is interested in building
+      mathematical models to summarize, explain, and predict phenomena
+      observed in brains. Currently, he is developing models to explain how
+      songbirds learn to sing. He previously worked with Dr. Nicolas Brunel
+      on the roles of inhibition and inhibitory plasticity in the learning
+      and memory of sequences. Outside of the lab he loves cooking and
+      exercising, and occasionally plays the xiao (Chinese flute).
+    outcome: Tencent Labs
+
+
+research_associates:
+  - name: Lun (Sam) Yin
+    current: false
+    years: 2017-2020
+    outcome: Emory Biostatistics (PhD program)
+
+  - name: Jack Goffinet
+    current: false
+    url: https://scholar.google.com/citations?user=-oXW2RYAAAAJ&hl=en
+    years: 2018-2020
+    outcome: Duke Computer Science (PhD program)
+
+  - name: Qian Kuang
+    current: false
+    years: 2017-2018
+
+  - name: Shariq Iqbal
+    current: false
+    url: https://shariqiqbal2810.github.io
+    years: 2015-2017
+    outcome: USC Computer Science (PhD) &#8594; Deepmind
+
+  - name: Xin (Cindy) Chen
+    current: false
+    years: 2016-2017
+    outcome: Data Engineer (Citadel)
+
+  - name: Abhishek Upadhyaya Ghimire
+    current: false
+    url: https://abhishekupadhyaya.github.io/
+    years: 2016-2017
+    outcome: Cloud Security Engineer (Cisco)
+
+  - name: Athelia Rosa Paulli
+    current: false
+    years: 2016-2017
+    outcome: UCLA &#8594; Children's National Hospital
+
+undergraduates:
+  - name: Christopher Zhou
+    current: false
+    years: 2022-2025
+
+  - name: Sara Liszeski
+    current: false
+    years: 2021-2023
+    outcome: Columbia Medical School
+
+  - name: Dominic Tanzillo
+    current: false
+    url: https://dominictanzillo.github.io/
+    years: 2020-2021
+    outcome: Duke Medical School
+
+  - name: Daniel Sprague
+    current: false
+    url: https://linkedin.com/in/daniel-sprague-yutaka
+    years: 2020-2021
+    outcome: Harvard Neurobiology
+
+  - name: Chaichontat Sriworarat (Richard)
+    current: false
+    url: https://github.com/chaichontat/
+    years: 2019-2021
+    outcome: Janelia Joint Graduate Program
+
+  - name: Sujal Manojar
+    current: false
+    url: https://www.sujalmanohar.com/
+    years: 2020
+    outcome: '<a href="https://hart.sanford.duke.edu/programs/hfp/">Hart Leadership Fellow</a> &#8594; Baylor College of Medicine'
+
+  - name: Raymond Chen
+    current: false
+    years: 2019
+    notes: Huang Fellow
+
+  - name: Thomas Li
+    current: false
+    url: http://thomasli.me/
+    years: 2018
+    outcome: Vanderbilt Medical School
+
+  - name: Andrew Bartuska
+    current: false
+    url: https://www.linkedin.com/in/andrew-bartuska-649917121
+    years: 2015-2016
+    notes: Senior Thesis
+    outcome: Harvard Medical School

_includes/person.html

@@ -1,37 +1,47 @@
-<div class="col-md-4">
-  <img class="img-circle" src="{{ include.image }}" alt="{{ include.name }}" height="200" width="200">
+{% assign person = include.person %}
+<div class="col-md-6 person-card">
+  <img class="img-circle person-photo" src="{{ person.image }}" alt="{{ person.name }}">
+  <h2>{{ person.name }}</h2>
+  {% if person.title %}<p class="person-title"><em>{{ person.title }}</em></p>{% endif %}
+  <p class="person-desc">
+    {{ person.desc }}
+  </p>
   <!-- Social Icons -->
-  <p class="hcenter">
-    <br>
-    {% if include.site %}
-    <a class="btn btn-social-icon btn-microsoft" href="{{ include.site }}">
+  <p class="person-social">
+    {% if person.site %}
+    <a class="btn btn-social-icon btn-microsoft" href="{{ person.site }}" aria-label="Personal site">
       <i class="fa fa-globe"></i>
     </a>
     {% endif %}
-    {% if include.github %}
-    <a class="btn btn-social-icon btn-github" href="{{ include.github }}">
+    {% if person.github %}
+    <a class="btn btn-social-icon btn-github" href="{{ person.github }}" aria-label="GitHub">
       <i class="fa fa-github"></i>
     </a>
     {% endif %}
-    {% if include.email %}
-    <a class="btn btn-social-icon btn-google" href="mailto:{{ include.email }}">
+    {% if person.email %}
+    <a class="btn btn-social-icon btn-google" href="mailto:{{ person.email }}" aria-label="Email">
       <i class="fa fa-envelope"></i>
     </a>
     {% endif %}
-    {% if include.linkedin %}
-    <a class="btn btn-social-icon btn-linkedin" href="{{ include.linkedin }}">
+    {% if person.linkedin %}
+    <a class="btn btn-social-icon btn-linkedin" href="{{ person.linkedin }}" aria-label="LinkedIn">
       <i class="fa fa-linkedin"></i>
     </a>
     {% endif %}
-    {% if include.site == null and include.github == null and include.email == null and include.linkedin == null %}
-    <br><br>
+    {% if person.scholar %}
+    <a class="person-svg-icon person-icon-scholar" href="{{ person.scholar }}" aria-label="Google Scholar">
+      <svg viewBox="0 0 24 24" fill="currentColor" aria-hidden="true"><path d="M5.242 13.769L0 9.5 12 0l12 9.5-5.242 4.269C17.548 11.249 14.978 9.5 12 9.5c-2.977 0-5.548 1.748-6.758 4.269zM12 10a7 7 0 1 0 0 14 7 7 0 0 0 0-14z"/></svg>
+    </a>
+    {% endif %}
+    {% if person.bluesky %}
+    <a class="person-svg-icon person-icon-bluesky" href="{{ person.bluesky }}" aria-label="Bluesky">
+      <svg viewBox="0 0 24 24" fill="currentColor" aria-hidden="true"><path d="M5.202 2.857C7.954 4.922 10.913 9.11 12 11.358c1.087-2.247 4.046-6.436 6.798-8.501C20.783 1.366 24 .213 24 3.883c0 .732-.42 6.156-.667 7.037-.856 3.061-3.978 3.842-6.755 3.37 4.854.826 6.089 3.562 3.422 6.299-5.065 5.196-7.28-1.304-7.847-2.97-.104-.305-.152-.448-.153-.327 0-.121-.05.022-.153.327-.568 1.666-2.782 8.166-7.847 2.97-2.667-2.737-1.432-5.473 3.422-6.3-2.777.473-5.899-.308-6.755-3.369C.42 10.04 0 4.615 0 3.883c0-3.67 3.217-2.517 5.202-1.026"/></svg>
+    </a>
+    {% endif %}
+    {% if person.orcid %}
+    <a class="person-svg-icon person-icon-orcid" href="{{ person.orcid }}" aria-label="ORCID">
+      <svg viewBox="0 0 24 24" fill="currentColor" aria-hidden="true"><path d="M12 0C5.372 0 0 5.372 0 12s5.372 12 12 12 12-5.372 12-12S18.628 0 12 0zM7.369 4.378c.525 0 .947.431.947.947s-.422.947-.947.947a.95.95 0 0 1-.947-.947c0-.525.422-.947.947-.947zm-.722 3.038h1.444v10.041H6.647V7.416zm3.562 0h3.9c3.712 0 5.344 2.653 5.344 5.025 0 2.578-2.016 5.025-5.325 5.025h-3.919V7.416zm1.444 1.303v7.444h2.297c3.272 0 4.022-2.484 4.022-3.722 0-2.016-1.284-3.722-4.097-3.722h-2.222z"/></svg>
+    </a>
     {% endif %}
-  </p>
-</div>
-<div class="col-md-5">
-  <h2>{{ include.name }}</h2>
-  <p><em>{{ include.title }}</em></p>
-  <p>
-    {{ include.desc }}
   </p>
 </div>