refactor: Regression

.github/workflows/deploy.yml

@@ -19,9 +19,7 @@ jobs:
 
             - name: Install dependencies
               run: |
-                  pip install -r requirements.txt
-                  pip install mkdocs-material mkdocs-material-extensions mkdocstrings[python]
-                  pip install -e .
+                  pip install -e ".[dev]"
 
             - name: Build and Deploy
               working-directory: docs # Set the working directory to 'docs'

.github/workflows/python-package.yml

@@ -27,7 +27,7 @@ jobs:
               run: |
                   python -m pip install --upgrade pip
                   python -m pip install flake8 pytest
-                  if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+                  pip install -e .
             - name: Lint with flake8
               run: |
                   # stop the build if there are Python syntax errors or undefined names

pycircstat2/data/pewsey/lung_deaths.csv

@@ -0,0 +1,73 @@
+,year,month,deaths
+1,1974,1,3035
+2,1974,2,2552
+3,1974,3,2704
+4,1974,4,2554
+5,1974,5,2014
+6,1974,6,1655
+7,1974,7,1721
+8,1974,8,1524
+9,1974,9,1596
+10,1974,10,2074
+11,1974,11,2199
+12,1974,12,2512
+13,1975,1,2933
+14,1975,2,2889
+15,1975,3,2938
+16,1975,4,2497
+17,1975,5,1870
+18,1975,6,1726
+19,1975,7,1607
+20,1975,8,1545
+21,1975,9,1396
+22,1975,10,1787
+23,1975,11,2076
+24,1975,12,2837
+25,1976,1,2787
+26,1976,2,3891
+27,1976,3,3179
+28,1976,4,2011
+29,1976,5,1636
+30,1976,6,1580
+31,1976,7,1489
+32,1976,8,1300
+33,1976,9,1356
+34,1976,10,1653
+35,1976,11,2013
+36,1976,12,2823
+37,1977,1,2996
+38,1977,2,2523
+39,1977,3,2540
+40,1977,4,2520
+41,1977,5,1994
+42,1977,6,1641
+43,1977,7,1691
+44,1977,8,1479
+45,1977,9,1696
+46,1977,10,1877
+47,1977,11,2032
+48,1977,12,2484
+49,1978,1,2899
+50,1978,2,2990
+51,1978,3,2890
+52,1978,4,2379
+53,1978,5,1933
+54,1978,6,1734
+55,1978,7,1617
+56,1978,8,1495
+57,1978,9,1440
+58,1978,10,1777
+59,1978,11,1970
+60,1978,12,2745
+61,1979,1,2841
+62,1979,2,3535
+63,1979,3,3010
+64,1979,4,2091
+65,1979,5,1667
+66,1979,6,1589
+67,1979,7,1518
+68,1979,8,1349
+69,1979,9,1392
+70,1979,10,1619
+71,1979,11,1954
+72,1979,12,2633

pycircstat2/data/pewsey/lung_deaths.csv-metadata.json

@@ -0,0 +1,25 @@
+{
+    "Description": "Monthly numbers of deaths attributed to lung disease in a given area, recorded over six consecutive years (1974-1979). Used in Pewsey, Neuhäuser & Ruxton (2014) to illustrate linear-circular regression with a periodic (annual) seasonal component. The February 1976 (3891) and February 1979 (3535) observations are typically treated as outliers and dropped before fitting the cosine regression model in §8.4.1-§8.4.2.",
+    "Source": "Hand et al. (1994) — A Handbook of Small Data Sets, Chapman & Hall.",
+    "Examples": "Pewsey, Neuhäuser & Ruxton (2014) §8.4.1-§8.4.4",
+    "Columns": {
+        "year": {
+            "name": "year",
+            "type": "integer",
+            "unit": "calendar year",
+            "description": "calendar year of observation (1974-1979)"
+        },
+        "month": {
+            "name": "month",
+            "type": "integer",
+            "unit": "month-of-year",
+            "description": "month index, 1=January through 12=December"
+        },
+        "deaths": {
+            "name": "deaths",
+            "type": "integer",
+            "unit": "count",
+            "description": "monthly number of deaths attributed to lung disease"
+        }
+    }
+}