ZedProfiler docs#26
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@MikeLippincott - this is looking strong. Kudos to getting us to this point! I've made several changes directly on top of yours. I'm going to approve this PR, but please also take a look at my changes and feel free to merge when ready. Please add any comments and I'd be happy to discuss |
gwaybio
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Jun 10, 2026
…miner integration - Replace pure random noise with 3D spherical objects: compact nuclear channel and a diffuse channel with per-object colocalization strength - Add interactive plotly z-slice browser for synthetic data preview - Hide data generation and viz code behind expand toggles - Import featurization modules via zedprofiler dot notation - Import IO classes via zedprofiler.IO.loading_classes module - Add pycytominer normalize + feature_select pipeline step - Add pairwise object correlation heatmap (plotly, RdBu) - Add walkthrough outline to intro cell - Add plotly and pycytominer to docs dependency group Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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the most recent commit enhances quality of life for the walkthrough and I think will be more impactful for someone (or an agent) wishing to understand ZP |
gwaybio
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Jun 10, 2026
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Description
Establishing V0.1 docs and notebook walkthrough.
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