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1003 Add ode seir metapop bindings#1554

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charlie0614 merged 119 commits into
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1003-ode-seir-metapop-add-bindings
May 13, 2026
Merged

1003 Add ode seir metapop bindings#1554
charlie0614 merged 119 commits into
mainfrom
1003-ode-seir-metapop-add-bindings

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@charlie0614 charlie0614 commented May 5, 2026

Changes and Information

Please briefly list the changes (main added features, changed items, or corrected bugs) made:

  • Add the python bindings for the ODE metapopulation model with implicit mobility

Merge Request - Guideline Checklist

Please check our git workflow. Use the draft feature if the Pull Request is not yet ready to review.

Checks by code author

  • Every addressed issue is linked (use the "Closes #ISSUE" keyword below).
  • New code adheres to coding guidelines.
  • No large data files have been added (files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.).
  • Tests are added for new functionality and a local test run was successful (with and without OpenMP).
  • Appropriate documentation within the code (Doxygen) for new functionality has been added in the code.
  • Appropriate external documentation (ReadTheDocs) for new functionality has been added to the online documentation and checked in the preview.
  • Proper attention to licenses, especially no new third-party software with conflicting license has been added.
  • (For ABM development) Checked benchmark results and ran and posted a local test above from before and after development to ensure performance is monitored.

Checks by code reviewer(s)

  • Corresponding issue(s) is/are linked and addressed.
  • Code is clean of development artifacts (no deactivated or commented code lines, no debugging printouts, etc.).
  • Appropriate unit tests have been added, CI passes, code coverage and performance is acceptable (did not decrease).
  • No large data files added in the whole history of commits(files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.).
  • On merge, add 2-5 lines with the changes (main added features, changed items, or corrected bugs) to the merge-commit-message. This can be taken from the briefly-list-the-changes above (best case) or the separate commit messages (worst case).

closes #1563

@charlie0614 charlie0614 requested a review from HenrZu May 11, 2026 12:55
@charlie0614 charlie0614 marked this pull request as ready for review May 11, 2026 14:24
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codecov Bot commented May 12, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 97.46%. Comparing base (46f65b5) to head (a30d321).
⚠️ Report is 2 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #1554   +/-   ##
=======================================
  Coverage   97.46%   97.46%           
=======================================
  Files         190      190           
  Lines       15966    15966           
=======================================
  Hits        15561    15561           
  Misses        405      405           

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Comment thread cpp/examples/CMakeLists.txt Outdated
Co-authored-by: reneSchm <49305466+reneSchm@users.noreply.github.com>
@charlie0614 charlie0614 merged commit 48f4547 into main May 13, 2026
1 check passed
@charlie0614 charlie0614 deleted the 1003-ode-seir-metapop-add-bindings branch May 13, 2026 11:13
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Add python bindings for the ODE metapopulation model with implicit mobility

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