diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index bcebe6c..b08d444 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -21,6 +21,11 @@ repos: entry: svgo --multipass language: system types: [svg] + # plab_logo_dark.svg has paths drawn outside its viewBox; svgo's + # optimization stripped attributes (clipPath / overflow handling) + # that kept that content visible when scaled. Skip it so the home + # page background renders correctly. + exclude: '^images/plab_logo_dark\.svg$' # Runs after the compression hooks so it sees post-compression sizes. - id: image-size-cap diff --git a/_data/people.yml b/_data/people.yml new file mode 100644 index 0000000..015436d --- /dev/null +++ b/_data/people.yml @@ -0,0 +1,317 @@ +# Lab people data, rendered by people.html. +# +# One list per role. Each entry has an optional `current` flag: +# current: true (default — present member, renders as rich card) +# current: false (alumni — renders as a list item under "Former members") +# +# Moving someone to alumni is a one-line edit: set `current: false`, +# then optionally add `years` and `outcome`. You can keep their image, +# desc, and social links — the template only renders those for current +# members, but preserving them keeps history available for later. +# +# Card schema (used when current is true or absent): +# name: string (required) +# title: string (optional) +# image: string (required, path under /images/) +# desc: string (required, supports inline HTML) +# site: string (optional, personal homepage) +# github: string (optional) +# email: string (optional) +# linkedin: string (optional) +# scholar: string (optional, Google Scholar URL) +# bluesky: string (optional) +# orcid: string (optional) +# +# Alumni-list schema (used when current is false): +# name: string (required) +# url: string (optional, what to wrap the name in) +# years: string (optional, e.g. "2017" or "2015-2016") +# notes: string (optional, HTML-safe parenthetical) +# outcome: string (optional, HTML-safe trailing "→ ..." text) + +pi: + name: John Pearson + image: /images/john.png + site: http://jmxpearson.com + github: https://github.com/jmxpearson + email: john.pearson@duke.edu + linkedin: https://www.linkedin.com/in/jmxpearson + bluesky: https://bsky.app/profile/jmxpearson.bsky.social + desc: >- + John earned his bachelor's degree in physics and math from the University + of Kentucky and his PhD in physics from Princeton. He became a neuroscientist + at Duke, where he did his postdoctoral training with Michael Platt, working + on the neurobiology of reward and decision-making. From 2015 to 2018, he was + an Assistant Research Professor in the Duke Institute for Brain Sciences. In + 2018, he moved back to the School of Medicine as an Assistant Professor in + the Department of Biostatistics & Bioinformatics, and in 2022, he moved + to the Department of Neurobiology, where he was promoted to Associate + Professor in 2025. In addition, he maintains secondary appointments in the + departments of Biostatics & Bioinformatics, Psychology & + Neuroscience, and Electrical and Computer Engineering. + (cv) + +postdocs: + - name: Jeff MacInnes + current: false + url: http://www.jeffmacinnes.com/ + years: 2017 + notes: joint with Elizabeth Johnson + outcome: University of Washington (postdoc) + + - name: Chintan Oza + current: false + years: 2015-2016 + notes: 'joint with Warren Grill' + outcome: Consulting (L.E.K.) + + - name: Anne Draelos + current: false + url: https://draelos.github.io + years: 2018-2022 + outcome: Assistant Professor, University of Michigan + + - name: Scott Smyre + current: false + years: 2023-2024 + outcome: Research Scientist, Wake Forest University + + - name: Seth Madlon-Kay + current: false + years: 2019-2025 + +graduate_students: + - name: Trevor Alston + title: Neurobiology PhD Student + current: true + image: /images/Trevor.jpg + github: https://github.com/Trevorules + email: trevor.alston@duke.edu + linkedin: https://www.linkedin.com/in/trevor-alston + desc: >- + Trevor is a sixth-year Neurobiology graduate student at Duke + University. He holds two Biomedical Engineering Degrees; he received + his BS degree from Rutgers University and his MS degree from + Northwestern University. His research interest is in Neuroengineering + and brain-related technologies. Outside of the lab he likes hanging + out with friends, playing games, and watching TV. + + - name: David St-Amand + title: Neurobiology Graduate Student + image: https://scholars.duke.edu/file/i6468953/image_6468953.JPG + scholar: https://scholar.google.com/citations?user=Bc4NeD0AAAAJ + github: https://github.com/DavidStA95 + email: david.st-amand@duke.edu + desc: >- + David is a third-year graduate student in Neurobiology. He graduated + from McGill University, where he received his BS in Psychology and + his MS in Neuroscience. His research investigates how efficient + coding models can help us understand how information is computed in + the retina. Outside the lab, he likes to work out and play games. + + - name: Shiyang Pan + title: Electrical and Computer Engineering PhD Student + image: /images/shiyang.jpg + site: https://waaaaaterfall.github.io + github: https://github.com/WaAaaAterfall + email: shiyang.pan@duke.edu + linkedin: https://www.linkedin.com/in/shiyangpan + desc: >- + Shiyang is a graduate student in Electrical & Computer Engineering + at Duke. She received her Bsc in Applied Mathematics from University + of Liverpool and Xi'an Jiaotong-Liverpool University. Her research + focuses on developing computational models and real-time methods to + understand the activity of large-scale neural populations. When not + doing research she enjoys music, reading, and creative writing. + + - name: Caitlin Lewis + title: Electrical & Computer Engineering PhD Student + image: /images/caitlin.jpg + github: https://github.com/clewis7 + email: caitlin.lewis@duke.edu + linkedin: https://www.linkedin.com/in/caitlinllewis/ + desc: >- + Caitlin is a second-year graduate student in Electrical & Computer + Engineering at Duke. She received her B.S. in Computer Science and + Statistics from the University of North Carolina at Chapel Hill. Her + research focuses on developing computational models and open-source + software tools for real-time analysis and visualization of large-scale + neural data. Outside of the lab, she enjoys reading and playing + pickleball with friends. + + # Former graduate students + - name: Kelsey McDonald + current: false + years: 2016-2021 + outcome: Data Scientist, Labcorp Drug Development + + - name: Robert Gramer + current: false + url: https://www.massgeneral.org/neurosurgery/doctors/current-residents + years: 2016-2017 + notes: 3rd year medical student + outcome: Neurosurgical Resident, Massachusetts General Hospital + + - name: Achint Kumar + current: false + url: https://achintzeus1994.github.io + years: 2021-2022 + + - name: Na Young Jun + current: false + years: 2017-2022 + outcome: Meta Reality Labs + + - name: Pranjal Gupta + current: false + years: 2018-2024 + outcome: data scientist + + - name: Kevin O'Neill + current: false + url: https://kevingoneill.github.io + years: 2018-2024 + outcome: postdoc, University College London + + - name: Raphael Geddert + current: false + years: 2019-2024 + outcome: data scientist, Gilead Sciences + + - name: Daniela de Albuquerque + current: false + url: https://dannyfa.github.io/ + years: 2020-2025 + outcome: Diagnostic Radiology Residency, University of Washington + + - name: Liz O'Gorman + current: false + years: 2022-2025 + + - name: Miles Martinez + current: false + years: 2020-2026 + title: Electrical and Computer Engineering PhD Candidate + image: /images/miles.jpg + github: https://github.com/mdmarti + email: miles.martinez@duke.edu + linkedin: https://www.linkedin.com/in/miles-martinez-00a496123/ + desc: >- + Miles is a fifth-year graduate student in Electrical and Computer + Engineering. He entered Duke through the CNAP program. He currently + develops and applies computational methods to understand the neural + bases of natural learning. When not doing research, he loves getting + outside and hiking or rock climbing — unless it's too cold, in which + case you can find him indoors cooking or playing games. + outcome: NYU postdoc with Cristina Savin + + - name: Ziyi Gong + current: false + years: 2024-2026 + title: Neurobiology Graduate Student + image: /images/gong.png + scholar: https://scholar.google.com/citations?user=zOKHGPgAAAAJ + github: https://github.com/gongziyida + email: ziyi.gong@duke.edu + desc: >- + Ziyi is a fourth-year PhD candidate in Neurobiology. He received his + B.S. in Computer Science with minors in Mathematics and Neuroscience + from the University of Pittsburgh. He is interested in building + mathematical models to summarize, explain, and predict phenomena + observed in brains. Currently, he is developing models to explain how + songbirds learn to sing. He previously worked with Dr. Nicolas Brunel + on the roles of inhibition and inhibitory plasticity in the learning + and memory of sequences. Outside of the lab he loves cooking and + exercising, and occasionally plays the xiao (Chinese flute). + outcome: Tencent Labs + + +research_associates: + - name: Lun (Sam) Yin + current: false + years: 2017-2020 + outcome: Emory Biostatistics (PhD program) + + - name: Jack Goffinet + current: false + url: https://scholar.google.com/citations?user=-oXW2RYAAAAJ&hl=en + years: 2018-2020 + outcome: Duke Computer Science (PhD program) + + - name: Qian Kuang + current: false + years: 2017-2018 + + - name: Shariq Iqbal + current: false + url: https://shariqiqbal2810.github.io + years: 2015-2017 + outcome: USC Computer Science (PhD) → Deepmind + + - name: Xin (Cindy) Chen + current: false + years: 2016-2017 + outcome: Data Engineer (Citadel) + + - name: Abhishek Upadhyaya Ghimire + current: false + url: https://abhishekupadhyaya.github.io/ + years: 2016-2017 + outcome: Cloud Security Engineer (Cisco) + + - name: Athelia Rosa Paulli + current: false + years: 2016-2017 + outcome: UCLA → Children's National Hospital + +undergraduates: + - name: Christopher Zhou + current: false + years: 2022-2025 + + - name: Sara Liszeski + current: false + years: 2021-2023 + outcome: Columbia Medical School + + - name: Dominic Tanzillo + current: false + url: https://dominictanzillo.github.io/ + years: 2020-2021 + outcome: Duke Medical School + + - name: Daniel Sprague + current: false + url: https://linkedin.com/in/daniel-sprague-yutaka + years: 2020-2021 + outcome: Harvard Neurobiology + + - name: Chaichontat Sriworarat (Richard) + current: false + url: https://github.com/chaichontat/ + years: 2019-2021 + outcome: Janelia Joint Graduate Program + + - name: Sujal Manojar + current: false + url: https://www.sujalmanohar.com/ + years: 2020 + outcome: 'Hart Leadership Fellow → Baylor College of Medicine' + + - name: Raymond Chen + current: false + years: 2019 + notes: Huang Fellow + + - name: Thomas Li + current: false + url: http://thomasli.me/ + years: 2018 + outcome: Vanderbilt Medical School + + - name: Andrew Bartuska + current: false + url: https://www.linkedin.com/in/andrew-bartuska-649917121 + years: 2015-2016 + notes: Senior Thesis + outcome: Harvard Medical School diff --git a/_includes/person.html b/_includes/person.html index a770ee1..fe85e15 100644 --- a/_includes/person.html +++ b/_includes/person.html @@ -1,37 +1,47 @@ -
- {{ include.name }} +{% assign person = include.person %} +
+ {{ person.name }} +

{{ person.name }}

+ {% if person.title %}

{{ person.title }}

{% endif %} +

+ {{ person.desc }} +

-

-
- {% if include.site %} - +

+ {% if person.site %} + {% endif %} - {% if include.github %} - + {% if person.github %} + {% endif %} - {% if include.email %} - + {% if person.email %} + {% endif %} - {% if include.linkedin %} - + {% if person.linkedin %} + {% endif %} - {% if include.site == null and include.github == null and include.email == null and include.linkedin == null %} -

+ {% if person.scholar %} + + + + {% endif %} + {% if person.bluesky %} + + + + {% endif %} + {% if person.orcid %} + + + {% endif %} -

-
-
-

{{ include.name }}

-

{{ include.title }}

-

- {{ include.desc }}

diff --git a/_layouts/home.html b/_layouts/home.html index dcc1209..f08c06c 100644 --- a/_layouts/home.html +++ b/_layouts/home.html @@ -2,7 +2,12 @@ {% include head.html %} - + + +
{% include navbar.html %} Duke School of Medicine, Department of Neurobiology