diff --git a/.gitignore b/.gitignore index 1316eb5401f..92078259524 100644 --- a/.gitignore +++ b/.gitignore @@ -16,6 +16,9 @@ hugo.linux # Temporary lock file while building /.hugo_build.lock +# Generated disciplines markdown export (regenerate via scripts/export_disciplines_to_md.py) +/scripts/output/ + ### Python ### # Byte-compiled / optimized / DLL files __pycache__/ diff --git a/assets/scss/custom.scss b/assets/scss/custom.scss index 96ae3c59461..d0f8e13afe4 100644 --- a/assets/scss/custom.scss +++ b/assets/scss/custom.scss @@ -1881,6 +1881,28 @@ h1.clusters-site-heading.clusters-hub-page__title { } } +/* -------------------------------------------------- */ +/* Disciplines page styles */ +/* -------------------------------------------------- */ +.disciplines-category-badge { + font-size: 0.7rem; + font-weight: 600; + padding: 0.15em 0.5em; + border-radius: 3px; + margin-right: 0.4em; + vertical-align: middle; + white-space: nowrap; +} + +.disciplines-resource-item { + margin-bottom: 0.35rem; + line-height: 1.5; +} + +.disciplines-resource-item a { + word-break: break-word; +} + /* -------------------------------------------------- */ /* Featured Resources: cards, filters, popups, lists */ /* -------------------------------------------------- */ diff --git a/config/_default/menus.toml b/config/_default/menus.toml index b8cec839398..ff001ad8e0a 100644 --- a/config/_default/menus.toml +++ b/config/_default/menus.toml @@ -166,6 +166,12 @@ weight = 34 parent = "nexus" + [[main]] + name = "Disciplines" + url = "/disciplines" + weight = 34.5 + parent = "nexus" + [[main]] name = "Curated Resources" url = "/resources" diff --git a/content/disciplines/_index.md b/content/disciplines/_index.md new file mode 100644 index 00000000000..386062c53ef --- /dev/null +++ b/content/disciplines/_index.md @@ -0,0 +1,21 @@ ++++ +type = "disciplines" +layout = "single" +title = "Open Research Across Disciplines — FORRT" +heading_title = "Open Research Across Disciplines" + +summary = "Explore open research practices, examples, and resources across 38 disciplines grouped into 11 fields — from natural sciences and humanities to engineering, meta-research, and cross-cutting methodologies. A curated guide for researchers and educators." + +description = "Explore open research practices, examples, and resources across 38 disciplines grouped into 11 fields — from natural sciences and humanities to engineering, meta-research, and cross-cutting methodologies." + +sharing_title = "Open Research Across Disciplines — FORRT" +sharing_description = "Open research resources and examples across 38 disciplines: natural sciences, social sciences, humanities, engineering, and more." + +keywords = [ "open research", "open science disciplines", "FORRT", "open data", "open methods", "open access", "reproducibility", "research transparency", "discipline-specific open science" ] + +draft = false + +[sitemap] + changefreq = "monthly" + priority = 0.8 ++++ diff --git a/data/disciplines.json b/data/disciplines.json new file mode 100644 index 00000000000..0da4d2a9162 --- /dev/null +++ b/data/disciplines.json @@ -0,0 +1,4298 @@ +{ + "fields": [ + { + "number": 1, + "name": "Natural Sciences", + "summary": "", + "disciplines": [ + { + "name": "Chemistry", + "examples": "Open Data: Lia et al. (2020) (https://doi.org/10.12688/wellcomeopenres.15893.2). The paper is published in Wellcome Open Research (https://wellcomeopenresearch.org/) which is a rapid and transparent publishing platform. Wellcome Open Research supports data citations and peer review reports and follows an open research publishing model which entails publication within days of submission followed by an open invited peer review. All the data used in this paper is openly available with the paper which directs to RCSB Protein Data Bank (https://www.rcsb.org/) and Zenodo (https://zenodo.org/record/3817277) for underlying data and extended data.", + "resources": [ + { + "title": "Why chemistry research should be open access", + "link": "https://www.springeropen.com/p/chemistry", + "category": "General" + }, + { + "title": "Article about open data", + "link": "https://www.chemistryworld.com/news/open-data-linked-to-higher-citations-for-journal-articles/3010723.article", + "category": "General" + }, + { + "title": "Royal Society of Chemistry often hold open research events, e.g.", + "link": "https://www.rsc.org/events/detail/42090/open-chemical-science", + "category": "General" + }, + { + "title": "Royal Society of Chemistry recorded discussion of plan S", + "link": "https://youtu.be/isSnSYMpZjY", + "category": "General" + }, + { + "title": "Open-source software lists", + "link": "https://awesomeopensource.com/projects/chemistry", + "category": "Open Methods" + }, + { + "title": "Open-source software lists", + "link": "https://www.openchemistry.org/", + "category": "Open Methods" + }, + { + "title": "List of chemistry databases", + "link": "https://www.rsc.org/journals-books-databases/databases-literature-updates/", + "category": "Open Data" + }, + { + "title": "Chemistry resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Chemistry", + "category": "Open Data" + }, + { + "title": "Preprint repositories", + "link": "https://chemrxiv.org/", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://ecsarxiv.org", + "category": "Open Outputs" + }, + { + "title": "Details of Open Access Journals open-access.network: Open Access in Chemistry", + "link": "", + "category": "Open Outputs" + } + ] + }, + { + "name": "Physics", + "examples": "Open Methods: Open workflow. For example, “ESCAPE (European Science Cluster of Astronomy and Particle physics ESFRI research infrastructures) brings together the astronomy, astroparticle and particle physics communities. With this, ESCAPE puts together … projects with aligned challenges of data-driven research, with demonstrated capabilities in addressing various stages of data workflow and concerned with fundamental research through complementary approaches.” (https://projectescape.eu/about-us)\nOpen Data: The Galaxy and Mass Assembly (GAMA) is a “project to exploit the latest generation of ground-based and space-borne survey facilities to study cosmology and galaxy formation and evolution... Using public data, its own campaigns and data sharing with independent survey imaging survey teams, “GAMA is creating an extraordinary multi-wavelength photometric and spectroscopic dataset with outstanding values to both the large-scale structure and galaxy evolution communities.” Details of data releases are provided on the GAMA website.(GAMA | Galaxy And Mass Assembly (gama-survey.org))", + "resources": [ + { + "title": "Engineering and Physical Sciences Research Council’s (EPSRC) framework policy requires researchers to link supporting data for funded papers", + "link": "https://epsrc.ukri.org/about/standards/researchdata/", + "category": "General" + }, + { + "title": "NASA Open Science 101 training", + "link": "https://science.nasa.gov/open-science/training/", + "category": "General" + }, + { + "title": "European Space Agency Open Science Catalogue", + "link": "https://opensciencedata.esa.int/", + "category": "" + }, + { + "title": "Data and software repositories, community science", + "link": "https://projectescape.eu/about-us", + "category": "Open Methods" + }, + { + "title": "Astropy", + "link": "https://www.astropy.org/", + "category": "" + }, + { + "title": "Data repository for research conducted at CERN", + "link": "http://opendata.cern.ch/", + "category": "Open Data" + }, + { + "title": "Collection of open access data repositories", + "link": "https://www.re3data.org/search?subjects[]=32%20Physics", + "category": "Open Data" + }, + { + "title": "Physics resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Physics", + "category": "Open Data" + }, + { + "title": "NASA Open Data Portal", + "link": "https://data.nasa.gov/", + "category": "" + }, + { + "title": "Open access guide. open-access.network: Open Access in Physics", + "link": "", + "category": "Open Outputs" + }, + { + "title": "Preprint repository", + "link": "https://arxiv.org/", + "category": "Open Outputs" + }, + { + "title": "CERN document server (particle physics preprints)", + "link": "https://cds.cern.ch/collection/Preprints", + "category": "Open Outputs" + } + ] + }, + { + "name": "Biological Sciences", + "examples": "Open Data: Using and contributing to open data. Examples are reported in Table 1 of Feng et al. (2019), such as: “Species distribution records were collected from the Ocean Biogeographic Information System (OBIS; http://iobis.org, accessed February 2016), from the Global Biodiversity Information Facility (GBIF; http://gbif.org, accessed January 2016), the Reef Life Survey (RLS; http://reeflifesurvey.com, accessed February 2016) and for a few species via personal communications (Bosch et al., 2018).” (From Feng et al (2019). A checklist for maximizing reproducibility of ecological niche models. Nat Ecol Evol 3, 1382–1395. https://doi.org/10.1038/s41559-019-0972-5)\nOpen Data: Working alongside ‘Open Microscopy’, Glencoe Software have developed and adopted Open Microscopy Environment – Next-Generation File Formats (OME-NGFF). This is a new “Cloud-friendly data format for multi-D bioimaging data using... It has been designed from its inception to work with scalable, cloud-based data resources and for public or shared data repositories used for AI training and data publication. There are examples of using OME-NGFF for whole slide imaging (as in digital pathology), high content screening and 3D imaging of large tissue samples.”. (OME-NGFF in action; Glencoe Software, Inc.)", + "resources": [ + { + "title": "MOOC: an introduction to Open Science principles in biomedicine, life sciences and other related research fields", + "link": "https://www.open.edu/openlearncreate/course/view.php?id=4633", + "category": "General" + }, + { + "title": "Taylor, B. and Woods, S. (2020) Reflections on the practice of Responsible (Research and) Innovation in synthetic biology, New Genetics and Society, (2), 127-147", + "link": "https://doi.org/10.1080/14636778.2019.1709431", + "category": "General" + }, + { + "title": "Open innovation in the life sciences. Conference, training, public lectures", + "link": "https://www.openinnovationlifesciences.com", + "category": "General" + }, + { + "title": "Open Research guidelines in plant pathology", + "link": "https://apsjournals.apsnet.org/doi/10.1094/PHYTO-12-23-0483-IA", + "category": "General" + }, + { + "title": "Open resources about biological sciences to share, exchange expertise", + "link": "https://elixir-europe.org/", + "category": "General" + }, + { + "title": "Open, digital and collaborative space for biological and medical research. Workflows, data, workshops, funding", + "link": "https://www.eosc-life.eu", + "category": "General" + }, + { + "title": "Agricultural and food sciences community. Scope: to provide access to publications, research data, projects and software related to the field. Includes the following tabs of sharable resources: publications, research data, software, other research", + "link": "https://explore.openaire.eu/search/project?projectId=corda__h2020::558cf59efd8258c3e65083d750182257", + "category": "General" + }, + { + "title": "Munafò, M., Noble, S., Browne, W. et al. (2014) Scientific rigor and the art of motorcycle maintenance. Nat Biotechnol 32, 871–873", + "link": "https://doi.org/10.1038/nbt.3004", + "category": "General" + }, + { + "title": "Recorded talk on preprints", + "link": "https://www.youtube.com/watch?index=5&list=PLPkfOHxsjx2gDqOooywho7uvw800pfxq2&v=SWDKyEZ4GeI", + "category": "Open Methods" + }, + { + "title": "Repository of mathematical models of biological and biomedical systems", + "link": "https://www.ebi.ac.uk/biomodels/", + "category": "Open Methods" + }, + { + "title": "Experimental Design Assistant. A web-based platform that can be used to help plan studies with animals", + "link": "https://www.nc3rs.org.uk/experimental-design-assistant-eda", + "category": "Open Methods" + }, + { + "title": "Resource Identification Initiative. A webpage that collates unique identifiers for referencing a research resource", + "link": "https://scicrunch.org/resources", + "category": "Open Methods" + }, + { + "title": "University of Sheffield discipline-specific guidance on how to make research data and software FAIR (findable, accessible, interoperable & reusable). This pilot was conducted in seven departments across the University: Architecture, Biosciences, English, Geography, Mechanical Engineering, Psychology, and the School of Health and Related Research. You can find the full set of checklists from the pilot departments here", + "link": "https://doi.org/10.15131/shef.data.20496855.v2", + "category": "Open Methods" + }, + { + "title": "Life sciences dataset", + "link": "https://www.nature.com/sdata/", + "category": "Open Data" + }, + { + "title": "UK Biobank", + "link": "https://www.ukbiobank.ac.uk/", + "category": "Open Data" + }, + { + "title": "GenBank: an annotated collection of publicly available genetic sequences, maintained by the National Centre for Biotechnology Information (NCBI)", + "link": "https://www.ncbi.nlm.nih.gov/genbank/", + "category": "Open Data" + }, + { + "title": "Biology resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Biology", + "category": "Open Data" + }, + { + "title": "The FAIR Cookbook is a collection of birds-eye view recipes on the FAIR components, the infrastructure needed, and a set of applied examples in the Life Sciences, offering a deep dive in technical aspects of FAIR data management. This is a ‘live resource’, because recipes are added and improved, collaboratively and iteratively, in an open manner. The objective of the FAIR Cookbook is to develop and disseminate guidance and processes needed to make and keep data FAIR in the Life Sciences", + "link": "https://faircookbook.elixir-europe.org", + "category": "Open Data" + }, + { + "title": "Preprint repositories", + "link": "https://www.biorxiv.org/", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://biohackrxiv.org", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://www.mdpi.com/journal/biology", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://journals.plos.org/plosbiology/", + "category": "Open Outputs" + } + ] + }, + { + "name": "Mathematics and Statistics", + "examples": "Open Methods: Jan Kokko and colleagues have been exploring the likelihood-free inference method, a methodological branch of statistics which is commonly used within simulation-based models in disciplines such as population genetics and astronomy. In their recent work (2019), they introduce an open-access Python adaptation of the Likelihood-Free Inference by Ratio Estimation (LFIRE), abbreviated as PYLFIRE. Based on penalised logistic regression, PYLFIRE can be accessed via the open-source inference software ELFI.\n(https://wellcomeopenresearch.org/articles/4-197/v1)", + "resources": [ + { + "title": "Calin-Jageman, R.J. & Cumming, G. (2019) The New Statistics for Better Science: Ask How Much, How Uncertain, and What Else Is Known, The American Statistician, 73, 271-280", + "link": "https://doi.org/10.1080/00031305.2018.1518266", + "category": "General" + }, + { + "title": "Open statistical software", + "link": "https://jasp-stats.org/", + "category": "Open Methods" + }, + { + "title": "Open statistical software", + "link": "https://www.jamovi.org/", + "category": "Open Methods" + }, + { + "title": "Open statistical software", + "link": "https://www.r-project.org/", + "category": "Open Methods" + }, + { + "title": "Open dataset with journal articles", + "link": "https://rss.onlinelibrary.wiley.com/hub/datasets", + "category": "Open Data" + }, + { + "title": "Database of worldbank open data", + "link": "https://data.worldbank.org/", + "category": "Open Data" + }, + { + "title": "Centre for Vision, Speech and Signal Processing, University of Surrey Datasets", + "link": "https://cvssp.org/", + "category": "Open Data" + }, + { + "title": "Mathematics resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Mathematics", + "category": "Open Data" + }, + { + "title": "Statistics resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Statistics", + "category": "Open Data" + }, + { + "title": "Preprint repository", + "link": "https://arxiv.org/", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://www.mdpi.com/journal/mathematics", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://www.springeropen.com/p/mathematics", + "category": "Open Outputs" + } + ] + }, + { + "name": "Environmental Sciences, Ecology and Geography", + "examples": "Open Data: Dr Jon Blower is the Chief Technology Officer at the Institute for Environmental Analytics (IEA) and contributed to developing an open source software named ncWMS (https://reading-escience-centre.github.io/ncwms/) which allows users to visualise and explore large-scale environmental datasets online. Data providers in the US and the European Commission’s Copernicus Marine Service adapted the software to create an interactive web-based ‘quick-look’ tool which allows users to browse through their data holdings online. With the distribution of the software source code for free (available on GitHub at https://github.com/Reading-eScience-Centre/ncwms) it allows reuse, modification and redistribution of the code that has been used in developing cutting-edge environmental data products and services. (https://www.reading.ac.uk/research/research-environment/open-research/open-research-case-studies.aspx)", + "resources": [ + { + "title": "Community dashboard for EuroMarine (a consortium of 56 research and academic organisations) and monitoring dashboard for marine research initiatives, including infrastructures (e.g. EMBRC and EMSO), advisory boards (e.g. Marine Boards and ICES), and transnational funding bodies (e.g. JPI-Oceans and Tara Foundation). Includes the following tabs of sharable resources: publications, research data, software, other research", + "link": "https://mes.openaire.eu/", + "category": "General" + }, + { + "title": "The UN Sustainable Development Solutions Network (SDSN). SDSN mobilizes global scientific and technological expertise to promote practical solutions for sustainable development. Developed SDGs Today program which uses inclusive data solutions to support informed decisions about sustainable development", + "link": "https://www.unsdsn.org/", + "category": "General" + }, + { + "title": "The UN Sustainable Development Solutions Network (SDSN). SDSN mobilizes global scientific and technological expertise to promote practical solutions for sustainable development. Developed SDGs Today program which uses inclusive data solutions to support informed decisions about sustainable development", + "link": "https://sdgstoday.org", + "category": "General" + }, + { + "title": "Guide on open educational resources in geography", + "link": "https://libguides.humboldt.edu/openedu/geog", + "category": "General" + }, + { + "title": "Reichman, O. J., Jones, M. B., & Schildhauer, M. P. (2011). Challenges and Opportunities of Open Data in Ecology. Science, 331, 703–705", + "link": "https://doi.org/10.1126/science.1197962", + "category": "Open Methods" + }, + { + "title": "Bonnefille, B., Karlsson, O., Rian, M. B., Raqib, R., Parvez, F., Papazian, S., Islam, M. S., & Martin, J. W. (2023). Nontarget Analysis of Polluted Surface Waters in Bangladesh Using Open Science Workflows. Environmental Science & Technology, 57(17), 6808-6824", + "link": "https://doi.org/10.1021/acs.est.2c08200", + "category": "Open Methods" + }, + { + "title": "University of Sheffield discipline-specific guidance on how to make research data and software FAIR (findable, accessible, interoperable & reusable). This pilot was conducted in seven departments across the University: Architecture, Biosciences, English, Geography, Mechanical Engineering, Psychology, and the School of Health and Related Research. You can find the full set of checklists from the pilot departments here", + "link": "https://doi.org/10.15131/shef.data.20496855.v2", + "category": "Open Methods" + }, + { + "title": "Open access journals", + "link": "https://rgs-ibg.onlinelibrary.wiley.com/loi/20544049", + "category": "Open Data" + }, + { + "title": "Open access journals", + "link": "https://www.longdom.org/geography-natural-disasters.html", + "category": "Open Data" + }, + { + "title": "Paper on barriers to open data in environmental sciences", + "link": "https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0146695", + "category": "Open Data" + }, + { + "title": "Culina, A., Baglioni, M., Crowther, T.W. et al. (2018). Navigating the unfolding Open Data landscape in ecology and evolution. Nat Ecol Evol 2, 420–426", + "link": "https://doi.org/10.1038/s41559-017-0458-2", + "category": "Open Data" + }, + { + "title": "Natural Environment Research Council (NERC) Environmental Data Service provides the largest collection of environmental science data in the UK", + "link": "https://eds.ukri.org/", + "category": "Open Data" + }, + { + "title": "Environmental Science resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Environmental%2520Science", + "category": "Open Data" + }, + { + "title": "Geography resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Geography", + "category": "Open Data" + }, + { + "title": "Ecology resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Ecology", + "category": "Open Data" + }, + { + "title": "Preprint repositories", + "link": "https://eartharxiv.org/", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://ecoevorxiv.org", + "category": "Open Outputs" + }, + { + "title": "Directory of open access journals", + "link": "https://bit.ly/39r3kQ4", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://rgs-ibg.onlinelibrary.wiley.com/loi/20544049", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://www.longdom.org/geography-natural-disasters.html", + "category": "Open Outputs" + } + ] + } + ] + }, + { + "number": 2, + "name": "Life, Medical and Health Sciences", + "summary": "", + "disciplines": [ + { + "name": "Health Sciences and Medicine", + "examples": "Open Methods: The “Unseating Big Pharma\" case study involves collaboration from 15 countries with the aim to end the legacy of big pharma. Scientists are working together in an effort to show how an open-science model can end dependency on manufacturers and benefit vaccine equity. (Unseating big pharma: the radical plan for vaccine equity (nature.com))\nOpen Data: “Carsten Brink works with sensitive personal data in the field of radiotherapy for cancer patients. Having FAIR (Findable, Accessible, Interoperable, Reusable) data is essential to the researchers in his field, because they need interoperable data from a large number of patients to predict outcomes. The researchers in his field used to gather data from many different institutes and pool them in one physical location to run models. But, because they need to preserve the patients’ confidentiality, physically moving the data is a legally complicated task. Instead, they now work with distributed learning, which allows them to analyse data at other institutes without having to physically move them.”\n(https://howtofair.dk/how-to-fair/#health-science)", + "resources": [ + { + "title": "Kostkova, P., Brewer, H., de Lusignan, S., Fottrell, E., Goldacre, B., Hart, G., ... and Ross, E. (2016). Who owns the data? Open Data for healthcare. Frontiers in public health, 4", + "link": "https://doi.org/10.3389/fpubh.2016.00007", + "category": "General" + }, + { + "title": "Guides for MRC funded studies", + "link": "https://mrc.ukri.org/research/policies-and-guidance-for-researchers/open-research-data-clinical-trials-and-public-health-interventions/", + "category": "General" + }, + { + "title": "Guides for MRC funded studies", + "link": "https://mrc.ukri.org/research/policies-and-guidance-for-researchers/open-access-policy/", + "category": "General" + }, + { + "title": "Guide for DHSC and NIHR funded studies", + "link": "https://www.nihr.ac.uk/documents/nihr-open-access-policy/12251", + "category": "General" + }, + { + "title": "Allen C, Mehler, D.M.A. (2019) Open science challenges, benefits and tips in early career and beyond. PLoS Biol 17(5): e3000246", + "link": "https://doi.org/10.1371/journal.pbio.3000246", + "category": "General" + }, + { + "title": "Case studies: working with transcript data; working with sensitive survey data", + "link": "https://howtofair.dk/how-to-fair/#humanities", + "category": "General" + }, + { + "title": "STEM Podcast about Open Pharma Open Pharma - driving positive change in the communication of pharma-sponsored research: Dr Joana Osório (buzzsprout.com)", + "link": "", + "category": "General" + }, + { + "title": "Kwasnicka, D., Keller, J., Perski, O., Potthoff, S., ten Hoor, G., & Ainsworth, B. et al. (2022). White Paper: Open Digital Health – accelerating transparent and scalable health promotion and treatment. Health Psychology Review, 1-17", + "link": "https://doi.org/10.1080/17437199.2022.2046482", + "category": "General" + }, + { + "title": "Héroux ME, Butler AA, Cashin AG, et al. (2022). Quality Output Checklist and Content Assessment (QuOCCA): a new tool for assessing research quality and reproducibility. BMJ Open, 12:e060976", + "link": "https://doi.org/10.1136/bmjopen-2022-060976", + "category": "General" + }, + { + "title": "Harris JK, Combs TB, Johnson KJ, Carothers BJ, Luke DA, Wang X. (2019). Three Changes Public Health Scientists Can Make to Help Build a Culture of Reproducible Research. Public Health Reports. , 109-111", + "link": "https://doi.org/10.1177/0033354918821076", + "category": "General" + }, + { + "title": "Best Practice for Mental Health Data Science: Checklist", + "link": "https://mhdss.ac.uk/best-practice-mental-health-data-science", + "category": "Open Methods" + }, + { + "title": "Best Practice for Mental Health Data Science: case studies", + "link": "https://mhdss.ac.uk/case-studies", + "category": "Open Methods" + }, + { + "title": "UKRN primer, pre-registration and registered reports", + "link": "https://www.ukrn.org/primers/", + "category": "Open Methods" + }, + { + "title": "PROSPERO: Registration for systematic reviews with a health-related outcome", + "link": "https://www.crd.york.ac.uk/PROSPERO/#aboutpage", + "category": "Open Methods" + }, + { + "title": "Protocols: An online platform for developing and sharing reproducible methods", + "link": "https://www.protocols.io", + "category": "Open Methods" + }, + { + "title": "University of Sheffield discipline-specific guidance on how to make research data and software FAIR (findable, accessible, interoperable & reusable). This pilot was conducted in seven departments across the University: Architecture, Biosciences, English, Geography, Mechanical Engineering, Psychology, and the School of Health and Related Research. You can find the full set of checklists from the pilot departments here", + "link": "https://doi.org/10.15131/shef.data.20496855.v2", + "category": "Open Methods" + }, + { + "title": "The Catalogue of Bias - University of Oxford", + "link": "https://catalogofbias.org/", + "category": "" + }, + { + "title": "Open access dataset", + "link": "https://digital.nhs.uk/data", + "category": "Open Data" + }, + { + "title": "Link for list of dataset archives", + "link": "https://library.bath.ac.uk/research-data/finding-data/health-medicine", + "category": "Open Data" + }, + { + "title": "Collection of physiological data and software", + "link": "https://fairsharing.org/biodbcore-000488/", + "category": "Open Data" + }, + { + "title": "Health Science resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Health%2520Science", + "category": "Open Data" + }, + { + "title": "Medicine resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Medicine", + "category": "Open Data" + }, + { + "title": "Preprint repositories", + "link": "https://www.medrxiv.org", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://biohackrxiv.org", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://osf.io/preprints/nutrixiv", + "category": "Open Outputs" + }, + { + "title": "Medicine and Health sciences preprint repository", + "link": "https://www.medrxiv.org/", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://bmjopen.bmj.com/", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://journals.lww.com/md-journal/pages/openaccess.aspx", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://journals.plos.org/plosmedicine/", + "category": "Open Outputs" + } + ] + }, + { + "name": "Psychology", + "examples": "Open Methods: Hoch, O’Grady and Adolph (2019) studied locomotion exploration in infants and found their movement to be instigated by the journey of exploration instead of a particular destination (https://onlinelibrary.wiley.com/doi/abs/10.1111/desc.12740). Their data were obtained from Datavyu (http://datavyu.org/), an open-source video coding and data visualization software which incorporates machine learning algorithms that can be used to annotate videos. It also generates paths taken by individuals as well as identifying people in videos which allows behaviour coding inputs to be conducted in real time. Datavyu has the aim of making behavioural data accessible to increase transparency in research and to instigate the use of videos as raw data. By using openly shared videos for data and documentation, the preserved data create an opportunity to ask new research questions and accelerate progress in the field.\nOpen Methods: The Many Babies project (https://manybabies.github.io/) aims to use an open approach to research into early development. The project works collaboratively with labs around the world to make all key project decisions (e.g., the research question, data collection, and the analysis). Their first project explored infants’ preferences for infant-directed speech, compared to adult-directed speech (https://manybabies.github.io/MB1/). The study involved 69 laboratories, from 16 countries, with a total of 2,329 infants studied, with each lab using one of three methods to measure the infants’ discrimination: the head-turn preference, central fixation, or eye-tracking. Through collaboration, this project was able to replicate a well-known finding from developmental research, in infants around the world. The materials used in this study and the data collected are all openly accessible on GitHub (https://github.com/manybabies/mb1-analysis-public) and the Open Science Framework (https://osf.io/re95x/). The collaborative projects undertaken by the Many Babies Project allow standardized replication of developmental research around the world whilst being as open and transparent as possible.\nOpen Methods and Open Data: PLAY (Play & Learning Across a Year) is a project that aims to explore infants and their mother’s natural behaviours in their homes, across 50 universities in the United States. All materials, home visit protocols and the video and questionnaire data collected are all openly available on their website (https://www.play-project.org/index.html).\nOpen Data: Anne Urai focuses on the neural basis of decision-making across mammalian species, the interaction between learning and perception, and the neural basis of cognitive aging. The International Brain Laboratory (IBL, https://www.internationalbrainlab.com/) is a collaboration of ~20 laboratories worldwide. Its researchers are dedicated to standardizing mouse decision-making behavior, coordinating measurements of neural activity across the brain, and using theoretical approaches to formalize the neural computations that support decision-making. In contrast to traditional neuroscientific practice, in which individual laboratories each probe different behaviors and record from a few select brain areas, IBL aims to deliver a standardized, high-density approach to behavioral and neural assays. This approach relies on a highly distributed, collaborative network of ~50 researchers – postdocs, graduate students, and scientific staff – who coordinate the intellectual, administrative, and sociological aspects of the project. IBL has a data portal that provides tools and solutions they adopted and developed at IBL which are open-sourced and accessible on GitHub.", + "resources": [ + { + "title": "Nosek, B. A. (2014, February 28). Improving my lab, my science with the open science framework. APS Observer, 27(3)", + "link": "https://www.psychologicalscience.org/observer/improving-my-lab-my-science-with-the-open-science-framework", + "category": "General" + }, + { + "title": "Klein, O., Hardwicke, T. E., Aust, F., Breuer, J., … Frank, M. C. (2018). A Practical Guide for Transparency in Psychological Science. Collabra:Psychology, 4(1), 20", + "link": "https://doi.org/10.1525/collabra.158", + "category": "General" + }, + { + "title": "Dashboard resource containing neuroscience research outputs and brain imaging databases", + "link": "https://ni.openaire.eu/", + "category": "General" + }, + { + "title": "Crüwell, S., van Doorn, J., Etz, A., Makel, M. C., Moshontz, H., Niebaum, J. C., … Schulte-Mecklenbeck, M. (2019). Seven easy steps to open science: An annotated reading list. Zeitschrift für Psychologie, 227(4), 237-248", + "link": "https://econtent.hogrefe.com/doi/10.1027/2151-2604/a000387", + "category": "General" + }, + { + "title": "Kathawalla, U. K., Silverstein, P., & Syed, M. (2021). Easing into open science: A guide for graduate students and their advisors. Collabra: Psychology, 7(1)", + "link": "https://doi.org/10.1525/collabra.18684", + "category": "General" + }, + { + "title": "Nosek, B. A., Alter, G., Banks, G. C., Borsboom, D., Bowman, S. D., Breckler, S. J., ... and Contestabile, M. (2015). Promoting an open research culture. Science, 348, 1422-1425", + "link": "https://doi.org/10.1126/science.aab2374", + "category": "General" + }, + { + "title": "Baldwin, J. R., Pingault, J. B., Schoeler, T., Sallis, H. M., & Munafò, M. R. (2022). Protecting against researcher bias in secondary data analysis: challenges and potential solutions. European Journal of Epidemiology, 37(1), 1-10", + "link": "https://doi.org/10.1007/s10654-021-00839-0", + "category": "General" + }, + { + "title": "Duncan, G. J., Engel, M., Claessens, A., & Dowsett, C. J. (2014). Replication and robustness in developmental research. Developmental Psychology, 50(11), 2417-2425", + "link": "https://doi.org/10.1037/a0037996", + "category": "General" + }, + { + "title": "Davis-Kean, P. E., & Ellis, A. (2019). An overview of issues in infant and developmental research for the creation of robust and replicable science. Infant Behavior and Development, 57, 101339", + "link": "https://doi.org/10.1016/j.infbeh.2019.101339", + "category": "General" + }, + { + "title": "Syed, M. (2022), Special issue on reliability of infant research. Inf Child Dev, 31, e2382", + "link": "https://doi.org/10.1002/icd.2382", + "category": "General" + }, + { + "title": "Educational Psychology in the Open Science Era", + "link": "https://www.tandfonline.com/toc/hedp20/56/2?nav=tocList", + "category": "General" + }, + { + "title": "Open Research Practices in Autism Research", + "link": "https://sites.google.com/york.ac.uk/openautismresearch/home?authuser=0", + "category": "General" + }, + { + "title": "Introduction to Open Science in Psychology Reading List", + "link": "https://rpt-rl.netlify.app/", + "category": "General" + }, + { + "title": "Lakens, D. (2019). The value of preregistration for psychological science: A conceptual analysis. Japanese Psychological Review, 62(3), 221-230", + "link": "https://doi.org/10.31234/osf.io/jbh4w", + "category": "General" + }, + { + "title": "Kalandadze, T., & Hart, S. (2022). Open developmental science: An overview and annotated reading list. Infant and Child Development", + "link": "https://doi.org/10.1002/icd.2334", + "category": "General" + }, + { + "title": "Farran, E. K., & Scerif, G. (2022). Genetic syndromes, neuroconstuctivism, and replicable research; challenges and future directions. Infant and Child Development. e2307", + "link": "https://doi.org/10.1002/icd.2307", + "category": "General" + }, + { + "title": "Pownall, M., Azevedo, F., Aldoh, A., Elsherif, M., Vasilev, M., & Pennington, C. et al. (2021). Embedding open and reproducible science into teaching: A bank of lesson plans and resources. Scholarship Of Teaching and Learning In Psychology", + "link": "https://doi.org/10.1037/stl0000307", + "category": "General" + }, + { + "title": "Special section (2023). Open science, qualitative methods and social psychology: Possibilities and tensions. British Journal of Social Psychology, 62(4), 1581-1940", + "link": "https://bpspsychub.onlinelibrary.wiley.com/toc/20448309/2023/62/4", + "category": "General" + }, + { + "title": "Leibniz Institute for Psychology: Open science institute for psychology that supports (psychological) researchers in using open science practices and provides various tools", + "link": "https://leibniz-psychology.org/en/", + "category": "" + }, + { + "title": "Leibniz Institute for Psychology: Open science institute for psychology that supports (psychological) researchers in using open science practices and provides various tools", + "link": "https://pubpsych.zpid.de/pubpsych/about.jsp?lang=EN", + "category": "" + }, + { + "title": "Leibniz Institute for Psychology: Open science institute for psychology that supports (psychological) researchers in using open science practices and provides various tools", + "link": "https://psyndex.de/en/", + "category": "" + }, + { + "title": "Leibniz Institute for Psychology: Open science institute for psychology that supports (psychological) researchers in using open science practices and provides various tools", + "link": "https://www.testarchiv.eu/en", + "category": "" + }, + { + "title": "Leibniz Institute for Psychology: Open science institute for psychology that supports (psychological) researchers in using open science practices and provides various tools", + "link": "https://prereg-psych.org/", + "category": "" + }, + { + "title": "Leibniz Institute for Psychology: Open science institute for psychology that supports (psychological) researchers in using open science practices and provides various tools", + "link": "https://ethiktool.org/en/main", + "category": "" + }, + { + "title": "Leibniz Institute for Psychology: Open science institute for psychology that supports (psychological) researchers in using open science practices and provides various tools", + "link": "https://psycharchives.org/", + "category": "" + }, + { + "title": "Leibniz Institute for Psychology: Open science institute for psychology that supports (psychological) researchers in using open science practices and provides various tools", + "link": "https://rdc-psychology.org/en/about-the-rdc-at-zpid", + "category": "" + }, + { + "title": "Leibniz Institute for Psychology: Open science institute for psychology that supports (psychological) researchers in using open science practices and provides various tools", + "link": "https://datawiz.leibniz-psychology.org/DataWiz/?datawiz_locale=en", + "category": "" + }, + { + "title": "Leibniz Institute for Psychology: Open science institute for psychology that supports (psychological) researchers in using open science practices and provides various tools", + "link": "https://cama.psychopen.eu/", + "category": "" + }, + { + "title": "Leibniz Institute for Psychology: Open science institute for psychology that supports (psychological) researchers in using open science practices and provides various tools", + "link": "https://klarpsy.de/ueber/", + "category": "" + }, + { + "title": "Open Science Collaboration. (2015). Estimating the reproducibility of psychological science. Science, 349(6251), aac4716", + "link": "https://doi.org/10.1126/science.aac4716", + "category": "" + }, + { + "title": "Psychological Research Preregistration-Quantitative (aka PRP-QUANT) Template V3 Template for the preregistration of quantitative studies in psychology Publication: Bosnjak, M., Fiebach, C. J., Mellor, D., Mueller, S., O'Connor, D. B., Oswald, F. L., & Sokol, R. I. (2022). A template for preregistration of quantitative research in psychology: Report of the joint psychological societies preregistration task force.American Psychologist, 77(4), 602–615", + "link": "https://doi.org/10.1037/amp0000879", + "category": "Preregistration" + }, + { + "title": "Psychological Research Preregistration-Quantitative (aka PRP-QUANT) Template V3 Template for the preregistration of quantitative studies in psychology Publication: Bosnjak, M., Fiebach, C. J., Mellor, D., Mueller, S., O'Connor, D. B., Oswald, F. L., & Sokol, R. I. (2022). A template for preregistration of quantitative research in psychology: Report of the joint psychological societies preregistration task force.American Psychologist, 77(4), 602–615", + "link": "https://stef.shinyapps.io/prp-quant/", + "category": "Preregistration" + }, + { + "title": "Psychological Research Preregistration-Quantitative (aka PRP-QUANT) Template V3 Template for the preregistration of quantitative studies in psychology Publication: Bosnjak, M., Fiebach, C. J., Mellor, D., Mueller, S., O'Connor, D. B., Oswald, F. L., & Sokol, R. I. (2022). A template for preregistration of quantitative research in psychology: Report of the joint psychological societies preregistration task force.American Psychologist, 77(4), 602–615", + "link": "https://docs.google.com/document/d/12JmDrTA1WMGBsrFDC-8VZbosY75Q9Kkx1RMi8Q_SufI/edit?tab=t.0", + "category": "Preregistration" + }, + { + "title": "Psychological Research Preregistration-Quantitative (aka PRP-QUANT) Template V3 Template for the preregistration of quantitative studies in psychology Publication: Bosnjak, M., Fiebach, C. J., Mellor, D., Mueller, S., O'Connor, D. B., Oswald, F. L., & Sokol, R. I. (2022). A template for preregistration of quantitative research in psychology: Report of the joint psychological societies preregistration task force.American Psychologist, 77(4), 602–615", + "link": "http://dx.doi.org/10.23668/psycharchives.15193", + "category": "Preregistration" + }, + { + "title": "Psychological Research Preregistration-Quantitative (aka PRP-QUANT) Template V3 Template for the preregistration of quantitative studies in psychology Publication: Bosnjak, M., Fiebach, C. J., Mellor, D., Mueller, S., O'Connor, D. B., Oswald, F. L., & Sokol, R. I. (2022). A template for preregistration of quantitative research in psychology: Report of the joint psychological societies preregistration task force.American Psychologist, 77(4), 602–615", + "link": "https://doi.org/10.23668/psycharchives.5111", + "category": "Preregistration" + }, + { + "title": "AsPredicted - Preregistration platform that also provides the popular, very short AsPredicted preregistration template", + "link": "", + "category": "" + }, + { + "title": "Registered Report Protocol Preregistration (Chambers, 2026) - Template for writing Registered Reports", + "link": "", + "category": "" + }, + { + "title": "Van't Veer, A. E., & Giner-Sorolla, R. (2016). Pre-registration in social psychology—A discussion and suggested template. Journal of experimental social psychology, 67, 2-12", + "link": "https://doi.org/10.1016/j.jesp.2016.03.004", + "category": "" + }, + { + "title": "Brandt, M. J., IJzerman, H., Dijksterhuis, A., Farach, F. J., Geller, J., Giner-Sorolla, R., ... & Van't Veer, A. (2014). The replication recipe: What makes for a convincing replication?. Journal of Experimental Social Psychology, 50, 217-224", + "link": "https://doi.org/10.1016/j.jesp.2013.10.005", + "category": "" + }, + { + "title": "L. Haven, T., & Van Grootel, Dr. L. (2019). Preregistering qualitative research. Accountability in Research, 26(3), 229–244", + "link": "https://doi.org/10.1080/08989621.2019.1580147", + "category": "" + }, + { + "title": "Van den Akker, O., Weston, S., Campbell, L., Chopik, B., Damian, R., Davis-Kean, P., ... & Bakker, M. (2021). Preregistration of secondary data analysis: A template and tutorial. Meta-psychology, 5, 2625", + "link": "https://doi.org/10.15626/MP.2020.2625", + "category": "" + }, + { + "title": "COS Preregistration Challenge Template (OSF)", + "link": "", + "category": "" + }, + { + "title": "Beyer, F., Flannery, J., Gau, R., Janssen, L., Schaare, L., Hartmann, H., Nilsonne, G., Martin, S., Khalil, A., Lipp, I., Puhlmann, L., Heinrichs, H., Mohamed, A., Herholz, P., Sicorello, M., & Panagoulas, E. (2021). A fMRI pre-registration template. PsychArchives", + "link": "https://doi.org/10.23668/PSYCHARCHIVES.5121", + "category": "" + }, + { + "title": "Govaart, G. H., Schettino, A., Helbling, S., Mehler, D. M. A., Ngiam, W. X. Q., Moreau, D., … Paul, E. (2022, June 17). EEG and ERP Methods - Preregistration Template", + "link": "https://doi.org/10.31222/osf.io/4nvpt", + "category": "" + }, + { + "title": "Spitzer, L. (ed.). (2022). Preregistration Template for Scoping Reviews (based on PRP-QUANT & PRISMA-ScR). ZPID (Leibniz Institute for Psychology)", + "link": "https://doi.org/10.23668/psycharchives.5631", + "category": "" + }, + { + "title": "Spitzer, L. (ed.). (2022). Preregistration Template for Scoping Reviews (based on PRP-QUANT & PRISMA-ScR). ZPID (Leibniz Institute for Psychology)", + "link": "https://apps.leibniz-psychology.org/scope/", + "category": "" + }, + { + "title": "Pre-registration of multiverse analyses. (n.d.). Johnflournoy.Science. Retrieved April 7, 2026, from", + "link": "https://johnflournoy.science/multiverse-preregistration/", + "category": "" + }, + { + "title": "Preregistration of Experience-Sampling Studies", + "link": "", + "category": "" + }, + { + "title": "Crüwell, S., & Evans, N. J. (2021). Preregistration in diverse contexts: a preregistration template for the application of cognitive models. Royal Society Open Science, 8(10), 210155", + "link": "https://doi.org/10.1098/rsos.210155", + "category": "" + }, + { + "title": "Siepe, B. S., Bartoš, F., Morris, T. P., Boulesteix, A.-L., Heck, D. W., & Pawel, S. (2024). Simulation studies for methodological research in psychology: A standardized template for planning, preregistration, and reporting. Psychological Methods", + "link": "https://doi.org/10.1037/met0000695", + "category": "" + }, + { + "title": "Lakens, D. (2024). When and how to deviate from a preregistration. Collabra. Psychology, 10(1)", + "link": "https://doi.org/10.1525/collabra.117094", + "category": "Preregistration" + }, + { + "title": "Willroth EC, Atherton OE. Best Laid Plans: A Guide to Reporting Preregistration Deviations. Advances in Methods and Practices in Psychological Science. 2024;7(1). doi:10.1177/25152459231213802", + "link": "", + "category": "" + }, + { + "title": "PRP-DEV: Template for reporting deviations, based on the PRP-QUANT Template", + "link": "https://apps.leibniz-psychology.org/prp-dev/", + "category": "" + }, + { + "title": "Nosek BA, Lindsay DS. Preregistration Becoming the Norm in Psychological Science. 2018 Feb 28 [cited 2023 Jan 13]. In: APS Obs [Internet]", + "link": "https://www.psychologicalscience.org/observer/preregistration-becoming-the-norm-in-psychological-science/comment-page-1", + "category": "Preregistration" + }, + { + "title": "Wagenmakers E-J, Dutilh G. Seven Selfish Reasons for Preregistration. 2016 Oct 31 [cited 2023 Jan 13]. In: APS Obs [Internet]", + "link": "https://www.psychologicalscience.org/observer/seven%C3%A2%E2%82%AC%20selfish%C3%A2%E2%82%AC%20reasons%C3%A2%E2%82%AC%20for%C3%A2%E2%82%AC%20preregistration", + "category": "" + }, + { + "title": "Hardwicke, T. E., Thibault, R. T., Kosie, J. E., Wallach, J. D., Kidwell, M. C., & Ioannidis, J. P. A. (2022). Estimating the prevalence of transparency and reproducibility-related research practices in psychology (2014-2017). Perspectives on Psychological Science: A Journal of the Association for Psychological Science, 17(1), 239–251", + "link": "https://doi.org/10.1177/1745691620979806", + "category": "" + }, + { + "title": "Wicherts, J. M., Veldkamp, C. L., Augusteijn, H. E., Bakker, M., Van Aert, R., & Van Assen, M. A. (2016). Degrees of freedom in planning, running, analyzing, and reporting psychological studies: A checklist to avoid p-hacking. Frontiers in psychology, 7, 222767", + "link": "https://doi.org/10.3389/fpsyg.2016.01832", + "category": "" + }, + { + "title": "Blincoe, S., & Buchert, S. (2020). Research preregistration as a teaching and learning tool in undergraduate psychology courses. Psychology Learning & Teaching, 19(1), 107-115", + "link": "https://doi.org/10.1177/1475725719875844", + "category": "" + }, + { + "title": "Dirnagl, U. (2020). Preregistration of exploratory research: Learning from the golden age of discovery. PLoS biology, 18(3), e3000690", + "link": "https://doi.org/10.1371/journal.pbio.3000690", + "category": "" + }, + { + "title": "Heirene, R., LaPlante, D., Louderback, E., Keen, B., Bakker, M., Serafimovska, A., & Gainsbury, S. (2024). Preregistration specificity and adherence: A review of preregistered gambling studies and cross-disciplinary comparison. Meta-Psychology, 8", + "link": "https://doi.org/10.15626/mp.2021.2909", + "category": "" + }, + { + "title": "van den Akker, O. R., Bakker, M., van Assen, M. A. L. M., Pennington, C. R., Verweij, L., Elsherif, M. M., Claesen, A., Gaillard, S. D. M., Yeung, S. K., Frankenberger, J.-L., Krautter, K., Cockcroft, J. P., Kreuer, K. S., Evans, T. R., Heppel, F. M., Schoch, S. F., Korbmacher, M., Yamada, Y., Albayrak-Aydemir, N., . . . Wicherts, J. M. (2024). The potential of preregistration in psychology: Assessing preregistration producibility and preregistration-study consistency.Psychological Methods. Advance online publication", + "link": "https://doi.org/10.1037/met0000687", + "category": "" + }, + { + "title": "Van Den Akker, O. R., Van Assen, M. A. L. M., Bakker, M., Elsherif, M., Wong, T. K., & Wicherts, J. M. (2023). Preregistration in practice: A comparison of preregistered and non-preregistered studies in psychology. Behavior Research Methods, 56(6), 5424–5433", + "link": "https://doi.org/10.3758/s13428-023-02277-0", + "category": "" + }, + { + "title": "Preregistration posters: Brouwers, K., Cooke, A., Chambers, C. D., Henson, R., & Tibon, R. (2020). Evidence for prereg posters as a platform for preregistration. Nature Human Behaviour, 4(9), 884–886", + "link": "https://doi.org/10.1038/s41562-020-0868-z", + "category": "" + }, + { + "title": "Preregistration posters: Brouwers, K., Cooke, A., Chambers, C. D., Henson, R., & Tibon, R. (2020). Evidence for prereg posters as a platform for preregistration. Nature Human Behaviour, 4(9), 884–886", + "link": "https://doi.org/10.1016/j.tics.2018.01.008", + "category": "" + }, + { + "title": "Lakens, D. (2019). The value of preregistration for psychological science: A conceptual analysis. Japanese Psychological Review, 62(3), 221–230", + "link": "https://doi.org/10.24602/sjpr.62.3_221", + "category": "" + }, + { + "title": "Lakens, D., & DeBruine, L. M. (2021). Improving Transparency, Falsifiability, and Rigor by Making Hypothesis Tests Machine-Readable. Advances in Methods and Practices in Psychological Science, 4(2), 2515245920970949", + "link": "https://doi.org/10.1177/2515245920970949", + "category": "" + }, + { + "title": "Task repositories", + "link": "https://expfactory.github.io/", + "category": "Open Methods" + }, + { + "title": "Neuroimaging tool repository", + "link": "https://www.nitrc.org", + "category": "Open Methods" + }, + { + "title": "NIRO: Guideline resource for systematic reviews", + "link": "https://osf.io/erkwa/", + "category": "Open Methods" + }, + { + "title": "Pipeline tools. Automatic Analysis, NiPype. Neuroimaging in Python - Pipelines and Interfaces — nipy pipeline and interfaces package (nipype.readthedocs.io)", + "link": "", + "category": "Open Methods" + }, + { + "title": "Mullen, L. B. (2019, February 7). Scholarly Communication and Open Access in Psychology: Current Considerations for Researchers. PsyArXiv", + "link": "https://doi.org/10.31234/osf.io/2d7um", + "category": "Open Methods" + }, + { + "title": "Havron, N., Bergmann, C., & Tsuji, S. (2020). Preregistration in infant research-A primer. Infancy, 25(5), 734-754", + "link": "https://doi.org/10.1111/infa.12353", + "category": "Open Methods" + }, + { + "title": "Flake, J., & Fried, E. (2020). Measurement Schmeasurement: Questionable Measurement Practices and How to Avoid Them. Advances In Methods and Practices In Psychological Science, 3(4), 456-465", + "link": "https://doi.org/10.1177/2515245920952393", + "category": "Open Methods" + }, + { + "title": "Hobson, H., Poole, D., Pearson, A., & Fletcher-Watson, S. (2022). Opening up autism research: Bringing open research methods to our field. Autism, 26(5), 1011-1013", + "link": "https://doi.org/10.1177/13623613221105385", + "category": "Open Methods" + }, + { + "title": "Govaart, G., Schettino, A., Helbling, S., Mehler, D., Ngiam, W., & Moreau, D. et al. (2022). EEG ERP Preregistration Template", + "link": "https://antonio-schettino.com/publication/govaart-eeg-erp-prereg-template-2022/", + "category": "Open Methods" + }, + { + "title": "Schroeder, P., Artemenko, C., Kosie, J., Cockx, H., Stute, K., & Pereira, J. et al. (2022). Using preregistration as a tool for transparent fNIRS study design", + "link": "https://doi.org/10.31222/osf.io/zfawx", + "category": "Open Methods" + }, + { + "title": "Petersen, I., Apfelbaum, K., & McMurray, B. (2022). Adapting open science and pre‐registration to longitudinal research. Infant And Child Development", + "link": "https://doi.org/10.1002/icd.2315", + "category": "Open Methods" + }, + { + "title": "Kwasnicka, D., Keller, J., Perski, O., Potthoff, S., ten Hoor, G., & Ainsworth, B. et al. (2022). White Paper: Open Digital Health – accelerating transparent and scalable health promotion and treatment. Health Psychology Review, 1-17", + "link": "https://doi.org/10.1080/17437199.2022.2046482", + "category": "Open Methods" + }, + { + "title": "Nagy, T., Hergert, J., Elsherif, M. M., Wallrich, L., Schmidt, K., Waltzer, T., Payne, J. W., Gjoneska, B., Seetahul, Y., Wang, Y. A., Scharfenberg, D., Tyson, G., Yang, Y.-F., Skvortsova, A., Alarie, S., Graves, K., Sotola, L. K., Moreau, D., & Rubínová, E. (2025). Bestiary of questionable research practices in psychology. Advances in Methods and Practices in Psychological Science, 8(3)", + "link": "https://doi.org/10.1177/25152459251348431", + "category": "Open Methods" + }, + { + "title": "University of Sheffield discipline-specific guidance on how to make research data and software FAIR (findable, accessible, interoperable & reusable). This pilot was conducted in seven departments across the University: Architecture, Biosciences, English, Geography, Mechanical Engineering, Psychology, and the School of Health and Related Research. You can find the full set of checklists from the pilot departments here", + "link": "https://doi.org/10.15131/shef.data.20496855.v2", + "category": "Open Methods" + }, + { + "title": "Pennington, C. R. (2023). A Student's Guide to Open Science: Using the Replication Crisis to Reform Psychology. Open University Press", + "link": "https://www.mheducation.co.uk/a-student-s-guide-to-open-science-using-the-replication-crisis-to-reform-psychology-9780335251162-emea-group", + "category": "Open Methods" + }, + { + "title": "Hobson, H., Linden, A., Crane, L., & Kalandadze, T. (2023). Towards reproducible and respectful autism research: Combining open and participatory autism research practices. Research in Autism Spectrum Disorders, 106, 1-9", + "link": "https://doi.org/10.1016/j.rasd.2023.102196", + "category": "" + }, + { + "title": "PsychoPy: open source software for running experiments: Peirce, J. W., Hirst, R. J. & MacAskill, M. R. (2022). Building Experiments in PsychoPy. 2nd Edn London: Sage", + "link": "https://www.psychopy.org/", + "category": "" + }, + { + "title": "Pavlovia: a place for the wide community of researchers in the behavioural sciences to run, share, and explore experiments online", + "link": "https://pavlovia.org/", + "category": "" + }, + { + "title": "Open platform for sharing MRI, MEG, EEG, iEEG, and ECoG data", + "link": "https://openneuro.org", + "category": "Open Data" + }, + { + "title": "UK data service list of longitudinal cohort study data", + "link": "https://www.ukdataservice.ac.uk/get-data/key-data/cohort-and-longitudinal-studies.aspx", + "category": "Open Data" + }, + { + "title": "Twins Early Development Study (TEDS) data", + "link": "http://www.teds.ac.uk/researchers/teds-data-access-policy", + "category": "Open Data" + }, + { + "title": "Repository for unthresholded statistical maps, parcellations, and atlases of the brain", + "link": "https://neurovault.org/", + "category": "Open Data" + }, + { + "title": "Open video data software", + "link": "https://datavyu.org", + "category": "Open Data" + }, + { + "title": "Databrary supports data sharing of video and audio recordings among researchers in the behavioural, social, educational, developmental, neural, and computer sciences", + "link": "https://nyu.databrary.org/", + "category": "Open Data" + }, + { + "title": "TalkBank is a data repository of 14 research areas, focusing on spoken language", + "link": "https://talkbank.org/", + "category": "Open Data" + }, + { + "title": "Meyer, M. (2018). Practical Tips for Ethical Data Sharing. Advances In Methods And Practices In Psychological Science, 1(1), 131-144", + "link": "https://doi.org/10.1177/2515245917747656", + "category": "Open Data" + }, + { + "title": "Data archive and repository for Psycholinguistics The Language Archive (mpi.nl)", + "link": "", + "category": "Open Data" + }, + { + "title": "Towse, A. S., Ellis, D. A., & Towse, J. N. (2021). Making data meaningful: Guidelines for good quality open data. The Journal of Social Psychology, 161(4), 395-402", + "link": "https://doi.org/10.1080/00224545.2021.1938811", + "category": "Open Data" + }, + { + "title": "Psychology resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Psychology", + "category": "Open Data" + }, + { + "title": "Preprint repository", + "link": "https://psyarxiv.com", + "category": "Open Outputs" + }, + { + "title": "Guide to licensing your work on PsyArXiv", + "link": "http://blog.psyarxiv.com/2018/05/14/licensing-work-psyarxiv/", + "category": "Open Outputs" + }, + { + "title": "Syed, M. (2020, May 7). Managing Preprints across the Publication Pipeline. Get Syeducated", + "link": "https://getsyeducated.blogspot.com/2020/05/managing-preprints-across-publication.html", + "category": "Open Outputs" + } + ] + }, + { + "name": "Neuroscience", + "examples": "", + "resources": [ + { + "title": "Credible research resource from the British Neuroscience Association", + "link": "https://www.bnacredibility.org.uk/toolkits", + "category": "General" + }, + { + "title": "Open and Reproducible Neuroimaging from study inception to publication - online resource", + "link": "https://oreoni.github.io/index.html", + "category": "" + }, + { + "title": "Open and Reproducible Neuroimaging from study inception to publication - online resource", + "link": "https://doi.org/10.1016/j.neuroimage.2022.119623", + "category": "" + }, + { + "title": "Poldrack R, Baker C, Durnez J et al. Scanning the horizon: towards transparent and reproducible neuroimaging research. Nat Rev Neurosci 18, 115–126 (2017)", + "link": "https://doi.org/10.1038/nrn.2016.167", + "category": "" + }, + { + "title": "Data format standardization for neuroimaging data", + "link": "https://bids.neuroimaging.io/", + "category": "Open Methods" + }, + { + "title": "Data format standardization for neuroimaging data", + "link": "https://bids.neuroimaging.io/tools/index.html", + "category": "Open Methods" + }, + { + "title": "PsychoPy: open source software for running experiments: Peirce J. W. (2009). Generating stimuli for neuroscience using PsychoPy. Frontiers in Neuroinformatics, 2 (10), 1-8. doi:10.3389/neuro.11.010.2008", + "link": "https://www.psychopy.org/", + "category": "" + }, + { + "title": "Experimental Design Assistant for animal research: NC3R’s EDA", + "link": "https://nc3rs.org.uk/our-portfolio/experimental-design-assistant-eda", + "category": "" + }, + { + "title": "Open platform for sharing MRI, MEG, EEG, iEEG, and ECoG data", + "link": "https://openneuro.org", + "category": "Open Data" + }, + { + "title": "Repository for unthresholded statistical maps, parcellations, and atlases of the brain", + "link": "https://neurovault.org/", + "category": "" + }, + { + "title": "Collection of open visual working memory datasets collated by William Ngiam", + "link": "https://williamngiam.github.io/OpenWMData/", + "category": "" + }, + { + "title": "MRC CBU list of open datasets", + "link": "https://imaging.mrc-cbu.cam.ac.uk/methods/OpenDatasets", + "category": "" + }, + { + "title": "Preprint servers", + "link": "https://osf.io/preprints/psyarxiv", + "category": "Open Outputs" + }, + { + "title": "Preprint servers", + "link": "https://www.medrxiv.org/", + "category": "Open Outputs" + }, + { + "title": "Preprint servers", + "link": "https://www.biorxiv.org/", + "category": "Open Outputs" + }, + { + "title": "British Neuroscience Association guidance on preregistration and registered reports", + "link": "https://www.bnacredibility.org.uk/preregistration-and-registered-reports", + "category": "Preregistration and Registered Reports" + }, + { + "title": "Ellis, R. J. (2022). Questionable research practices, low statistical power, and other obstacles to replicability: Why preclinical neuroscience research would benefit from registered reports. eNeuro, 9(4), ENEURO.0017-22.2022", + "link": "https://doi.org/10.1523/ENEURO.0017-22.2022", + "category": "" + }, + { + "title": "Preregistration posters: Brouwers, K., Cooke, A., Chambers, C. D., Henson, R., & Tibon, R. (2020). Evidence for prereg posters as a platform for preregistration. Nature Human Behaviour, 4(9), 884–886", + "link": "https://doi.org/10.1038/s41562-020-0868-z", + "category": "" + }, + { + "title": "Preregistration posters: Brouwers, K., Cooke, A., Chambers, C. D., Henson, R., & Tibon, R. (2020). Evidence for prereg posters as a platform for preregistration. Nature Human Behaviour, 4(9), 884–886", + "link": "https://doi.org/10.1016/j.tics.2018.01.008", + "category": "" + }, + { + "title": "ARRIVE Guidelines for reporting Animal Studies in vivo experiments", + "link": "https://arriveguidelines.org/about", + "category": "Guidelines and checklists" + }, + { + "title": "Neuromatch Academy - Online summer school in computational neuroscience", + "link": "https://neuromatch.io/", + "category": "Open training" + }, + { + "title": "Brainhack School - reusable summer school program with online materials", + "link": "https://school.brainhackmtl.org/", + "category": "" + } + ] + }, + { + "name": "Sport and Exercise Science", + "examples": "University of Hull case study: https://libguides.hull.ac.uk/openresearch/hull#s-lib-ctab-15971210-1\nUniversity of Newcastle case study: https://www.ncl.ac.uk/mediav8/library/file-downloads/research-services/open-research/orange-case-study.pdf", + "resources": [ + { + "title": "Framing the problem Borg, D. N., Barnett, A. G., Caldwell, A. R., White, N. M., & Stewart, I. B. (2023). The bias for statistical significance in sport and exercise medicine. Journal of Science and Medicine in Sport, 26(3), 164-168", + "link": "https://doi.org/10.1016/j.jsams.2023.03.002", + "category": "General" + }, + { + "title": "Framing the problem Borg, D. N., Barnett, A. G., Caldwell, A. R., White, N. M., & Stewart, I. B. (2023). The bias for statistical significance in sport and exercise medicine. Journal of Science and Medicine in Sport, 26(3), 164-168", + "link": "https://doi.org/10.1136/bjsports-2019-101863", + "category": "General" + }, + { + "title": "Framing the problem Borg, D. N., Barnett, A. G., Caldwell, A. R., White, N. M., & Stewart, I. B. (2023). The bias for statistical significance in sport and exercise medicine. Journal of Science and Medicine in Sport, 26(3), 164-168", + "link": "https://doi.org/10.1123/jmld.2015-0010", + "category": "General" + }, + { + "title": "Framing the problem Borg, D. N., Barnett, A. G., Caldwell, A. R., White, N. M., & Stewart, I. B. (2023). The bias for statistical significance in sport and exercise medicine. Journal of Science and Medicine in Sport, 26(3), 164-168", + "link": "https://doi.org/10.1123/jmld.2022-0061", + "category": "General" + }, + { + "title": "Framing the problem Borg, D. N., Barnett, A. G., Caldwell, A. R., White, N. M., & Stewart, I. B. (2023). The bias for statistical significance in sport and exercise medicine. Journal of Science and Medicine in Sport, 26(3), 164-168", + "link": "https://doi.org/10.1080/1750984X.2023.2207255", + "category": "General" + }, + { + "title": "Framing the problem Borg, D. N., Barnett, A. G., Caldwell, A. R., White, N. M., & Stewart, I. B. (2023). The bias for statistical significance in sport and exercise medicine. Journal of Science and Medicine in Sport, 26(3), 164-168", + "link": "https://doi.org/10.1136/bjsports-2020-102607", + "category": "General" + }, + { + "title": "Framing the problem Borg, D. N., Barnett, A. G., Caldwell, A. R., White, N. M., & Stewart, I. B. (2023). The bias for statistical significance in sport and exercise medicine. Journal of Science and Medicine in Sport, 26(3), 164-168", + "link": "https://doi.org/10.1123/kr.2022-0039", + "category": "General" + }, + { + "title": "The Society for Transparency, Openness, and Replication in Kinesiology (STORK)", + "link": "https://storkinesiology.org/", + "category": "General" + }, + { + "title": "Peer Community in (PCI) Health & Movement Sciences", + "link": "https://healthmovsci.peercommunityin.org/", + "category": "General" + }, + { + "title": "Peer Community in (PCI) Health & Movement Sciences", + "link": "https://peercommunityin.org/", + "category": "General" + }, + { + "title": "Sports Science Replication Centre (SSRC)", + "link": "https://ssreplicationcentre.com/", + "category": "General" + }, + { + "title": "Abt, G., Boreham, C., Davison, G., Jackson, et al. (2020) Power, precision, and sample size estimation in sport and exercise science research, Journal of Sports Sciences, 38:17, 1933-1935", + "link": "https://doi.org/10.1080/02640414.2020.1776002", + "category": "Open Methods" + }, + { + "title": "Caldwell, A.R., Vigotsky, A.D., Tenan, M.S. et al. Moving sport and exercise science forward: A call for the adoption of more transparent research practices. Sports Medicine, 50, 449–459 (2020)", + "link": "https://doi.org/10.1007/s40279-019-01227-1", + "category": "Open Methods" + }, + { + "title": "Mesquida, C., Murphy, J., Lakens, D., & Warne, J. (2023). Publication bias, statistical power and reporting practices in the Journal of Sports Sciences: potential barriers to replicability. Journal of Sports Sciences, 41(16), 1507–1517", + "link": "https://doi.org/10.1080/02640414.2023.2269357", + "category": "Open Methods" + }, + { + "title": "Schweizer, G., & Furley, P. (2016). Reproducible research in sport and exercise psychology: The role of sample sizes. Psychology of Sport and Exercise, 23, 114-122", + "link": "https://doi.org/10.1016/j.psychsport.2015.11.005", + "category": "Open Methods" + }, + { + "title": "Articles about Registered Reports Abt, G., Boreham, C., Davison, G., Jackson, R., Wallace, E., & Williams, A. M. (2021). Registered Reports in the Journal of Sports Sciences. Journal of Sports Sciences, 39(16), 1789–1790", + "link": "https://doi.org/10.1080/02640414.2021.1950974", + "category": "Open Methods" + }, + { + "title": "Articles about Registered Reports Abt, G., Boreham, C., Davison, G., Jackson, R., Wallace, E., & Williams, A. M. (2021). Registered Reports in the Journal of Sports Sciences. Journal of Sports Sciences, 39(16), 1789–1790", + "link": "https://doi.org/10.51224/cik.v1i3.43", + "category": "Open Methods" + }, + { + "title": "Examples of open research practices in use Replication Studies Hutchinson, J. C., Murphy, J., de Lucia, B., O'Neill, E., Curtis, D., Mellano, K. T., Pelton, L., & Coker, N. (2024). Effects of Preferred versus Nonpreferred Music on Bench Press Performance. Communications in Kinesiology, 1(6)", + "link": "https://doi.org/10.51224/cik.2024.60", + "category": "Open Methods" + }, + { + "title": "Examples of open research practices in use Replication Studies Hutchinson, J. C., Murphy, J., de Lucia, B., O'Neill, E., Curtis, D., Mellano, K. T., Pelton, L., & Coker, N. (2024). Effects of Preferred versus Nonpreferred Music on Bench Press Performance. Communications in Kinesiology, 1(6)", + "link": "https://osf.io/6a5xj/analytics", + "category": "Open Methods" + }, + { + "title": "Examples of open research practices in use Replication Studies Hutchinson, J. C., Murphy, J., de Lucia, B., O'Neill, E., Curtis, D., Mellano, K. T., Pelton, L., & Coker, N. (2024). Effects of Preferred versus Nonpreferred Music on Bench Press Performance. Communications in Kinesiology, 1(6)", + "link": "https://osf.io/j39fa", + "category": "Open Methods" + }, + { + "title": "Examples of open research practices in use Replication Studies Hutchinson, J. C., Murphy, J., de Lucia, B., O'Neill, E., Curtis, D., Mellano, K. T., Pelton, L., & Coker, N. (2024). Effects of Preferred versus Nonpreferred Music on Bench Press Performance. Communications in Kinesiology, 1(6)", + "link": "https://osf.io/35fgp/", + "category": "Open Methods" + }, + { + "title": "Datasets for Journal of Science and Medicine in Sport", + "link": "https://www.journals.elsevier.com/journal-of-science-and-medicine-in-sport/mendeley-datasets", + "category": "Open Data" + }, + { + "title": "A number of institutions now have platforms for data dissemination. This is a particularly good example: Department for Health, University of Bath", + "link": "https://researchportal.bath.ac.uk/en/organisations/department-for-health/datasets/", + "category": "Open Data" + }, + { + "title": "The National ReferAll Database: An Open Dataset of Exercise Referral Schemes Across the UK", + "link": "https://doi.org/10.3390/ijerph18094831", + "category": "Open Data" + }, + { + "title": "The National ReferAll Database: An Open Dataset of Exercise Referral Schemes Across the UK", + "link": "https://osf.io/uzbw9/", + "category": "Open Data" + }, + { + "title": "", + "link": "https://physionet.org/", + "category": "Open Data" + }, + { + "title": "Preprint repository", + "link": "https://sportrxiv.org/index.php/server", + "category": "Open Outputs" + }, + { + "title": "Journals offering Registered Reports: Journal of Sports Sciences", + "link": "https://www.tandfonline.com/journals/rjsp20", + "category": "Open Outputs" + }, + { + "title": "Journals offering Registered Reports: Journal of Sports Sciences", + "link": "https://www.tandfonline.com/journals/rsmf20", + "category": "Open Outputs" + }, + { + "title": "Journals offering Registered Reports: Journal of Sports Sciences", + "link": "https://storkjournals.org/index.php/cik/article/view/26", + "category": "Open Outputs" + }, + { + "title": "Journals offering Registered Reports: Journal of Sports Sciences", + "link": "https://www.sciencedirect.com/journal/psychology-of-sport-and-exercise", + "category": "Open Outputs" + }, + { + "title": "Journals offering Registered Reports: Journal of Sports Sciences", + "link": "https://www.sciencedirect.com/journal/human-movement-science", + "category": "Open Outputs" + }, + { + "title": "Journals offering Registered Reports: Journal of Sports Sciences", + "link": "https://www.apa.org/pubs/journals/spy", + "category": "Open Outputs" + } + ] + }, + { + "name": "Veterinary Science", + "examples": "Open Methods: https://www.surrey.ac.uk/news/training-scientists-use-genomics-programs\nDr Arnoud van Vliet has been addressing issues scientists encounter when completing genomics data analyses. Without a doubt, anyone who works with materials from other laboratories (ranging from cell lines, reagents, and computer data) will have been frustrated by missing information, errors and things that just don’t work at another location. Many software programs 'penalise' a mistake with a cryptic and unhelpful error message and call on other software packages that aren’t installed by default. The outputs can also be incompatible with downstream software. To remedy this, Arnoud designed an online course using short video tutorials to teach scientists how to use these software programs at their own speed.\nThe user has access to:\nA virtual Linux computer that they can install on their own Windows or Mac laptops, with relatively modest hardware requirements. It comes with installation and usage instructions and contains all the required software and practice data. It’s also suitable for the users’ own applications later.\nInstruction videos (recorded on Zoom) for the nine different steps.\nTwo additional videos explaining how to work with Linux.\nA wash-up session at the end.", + "resources": [ + { + "title": "Diederich, K., Schmitt, K., Schwedhelm, P., Bert, B., & Heinl, C. (2022). A guide to open science practices for animal research. PLOS Biology, 20(9), e3001810", + "link": "https://doi.org/10.1371/journal.pbio.3001810", + "category": "General" + }, + { + "title": "Resources required – please complete the Google form (link provided in the introduction) if you can input here", + "link": "", + "category": "Open Methods" + }, + { + "title": "Animal research and testing. Workflow checklist in Table 1 Smith, A. J., Clutton, R. E., Lilley, E., Hansen, K. E. A., and Brattelid, T. (2018). PREPARE: guidelines for planning animal research and testing. Laboratory Animals, 52(2), 135–141", + "link": "https://doi.org/10.1177/0023677217724823", + "category": "Open Data" + }, + { + "title": "Open data in veterinary science", + "link": "https://osf.io/nmshk/download", + "category": "Open Data" + }, + { + "title": "Open data in veterinary science", + "link": "https://www.rvc.ac.uk/vetcompass/papers-and-data/open-access-data", + "category": "Open Data" + }, + { + "title": "Open data on global animal disease", + "link": "https://empres-i.review.fao.org/#/", + "category": "Open Data" + }, + { + "title": "Animal tracking data website", + "link": "https://www.zoatrack.org", + "category": "Open Data" + }, + { + "title": "Open datasets/repositories", + "link": "https://www.journals.elsevier.com/research-in-veterinary-science/mendeley-data", + "category": "Open Data" + }, + { + "title": "Open datasets/repositories", + "link": "https://www.movebank.org/cms/movebank-main", + "category": "Open Data" + }, + { + "title": "Veterinary Medicine resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Veterinary%2520Medicine", + "category": "Open Data" + }, + { + "title": "Open access journals", + "link": "https://www.frontiersin.org/journals/veterinary-science", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://onlinelibrary.wiley.com/journal/20531095", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://publons.com/journal/41890/open-access-journal-of-veterinary-science-research/", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://www.innovationinfo.org/veterinary-science-and-research", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://www.degruyter.com/view/journals/ovs/ovs-overview.xml", + "category": "Open Outputs" + }, + { + "title": "Paper on avoiding predatory open access journals", + "link": "https://doi.org/10.3389/fvets.2015.00022", + "category": "Open Outputs" + } + ] + } + ] + }, + { + "number": 3, + "name": "Social Sciences", + "summary": "", + "disciplines": [ + { + "name": "Social Sciences", + "examples": "", + "resources": [ + { + "title": "Data Preservation Alliance for the Social Sciences", + "link": "http://www.data-pass.org", + "category": "General" + }, + { + "title": "A Bibliography on Open Science in the Social Sciences (Made by Nate Breznau)", + "link": "https://www.zotero.org/groups/2608283/open_science_readings", + "category": "General" + }, + { + "title": "Guide to Data Access and Research Transparency in Social Sciences", + "link": "https://www.dartstatement.org/", + "category": "General" + }, + { + "title": "CIVICA Research Open Science for the Social Sciences", + "link": "https://zenodo.org/communities/civica-open-social-science?q=&l=list&p=1&s=10&sort=newest", + "category": "General" + }, + { + "title": "Should Reproducibility be the Aim for ?", + "link": "https://www.youtube.com/watch?v=KMKgfFLIm3o&list=PLPK_Rz82LOLC7DGXpY5eo4kOcsdHw_sSH&index=5", + "category": "" + }, + { + "title": "Guidelines for building transparency into observational social science research", + "link": "https://www.sciencedirect.com/science/article/abs/pii/S0165176518301277?via%3Dihub", + "category": "Open Methods" + }, + { + "title": "Silverstein, P., Elman, C., Montoya, A., McGillivray, B., Pennington, C. R., Harrison, C. H., ... & Syed, M. (2024). A guide for social science journal editors on easing into open science. Research integrity and peer review, 9(1), 2", + "link": "https://doi.org/10.1186/s41073-023-00141-5", + "category": "Open Methods" + }, + { + "title": "Open access datasets", + "link": "https://www.oecd-ilibrary.org", + "category": "Open Data" + }, + { + "title": "Open access datasets", + "link": "http://www.data-pass.org/", + "category": "Open Data" + }, + { + "title": "Open access datasets", + "link": "https://dri.ie/", + "category": "Open Data" + }, + { + "title": "Guidance on sharing data, code and replicating", + "link": "https://social-science-data-editors.github.io/guidance/", + "category": "Open Data" + }, + { + "title": "Ball, R., & Medeiros, N. (2012). Teaching Integrity in Empirical Research: A Protocol for Documenting Data Management and Analysis. The Journal of Economic Education, 43(2), 182-189", + "link": "https://doi.org/10.1080/00220485.2012.659647", + "category": "Open Data" + }, + { + "title": "List of open access journals in social sciences", + "link": "https://simonbatterbury.wordpress.com/2015/10/25/list-of-decent-open-access-journals/", + "category": "Open Outputs" + }, + { + "title": "Resource library", + "link": "https://www.bitss.org/resource-library/", + "category": "Open Outputs" + } + ] + }, + { + "name": "Anthropology", + "examples": "", + "resources": [ + { + "title": "What does Open Research mean for Qualitative research?", + "link": "https://blogs.lse.ac.uk/impactofsocialsciences/2025/06/23/what-does-open-research-mean-for-qualitative-research/", + "category": "General" + }, + { + "title": "Ballestero, A. (2026). Transparency. In The International Encyclopedia of Anthropology, H. Callan (Ed.)", + "link": "https://doi.org/10.1002/9781118924396.wbiea1505", + "category": "General" + }, + { + "title": "Making Research on Vulnerable and Marginalised Communities Open (2025)", + "link": "https://www.youtube.com/watch?v=WJ_vQpyW_ms", + "category": "" + }, + { + "title": "2013 issue of POLAR about the politics of transparency and its practices in political and legal anthropology (and otherwise)", + "link": "https://polarjournal.org/virtual-edition-transparency/", + "category": "" + } + ] + }, + { + "name": "Sociology", + "examples": "Open Data: “Make all the materials associated with a research paper or book available online. This means data, methodological steps, analyses and software code...Even if you do not share data, you can build an open workflow from the beginning that allows others to understand every step of the data generating process (Steinhardt 2018)...Some forms of qualitative research, for example those involving grounded theory and interpretivist methods, require decisions during the research process that cannot be foreseen. This uncertainty can be outlined in a pre-registration stating explicitly when flexibility is and is not admissible (Haven and Grootel 2019).” (From Breznau (2019, September 21). The Future of Sociology Depends on Open Science. https://doi.org/10.31235/osf.io/d37be)", + "resources": [ + { + "title": "Breznau, N. (2019, September 21). The Future of Sociology Depends on Open Science", + "link": "https://doi.org/10.31235/osf.io/d37be", + "category": "General" + }, + { + "title": "Breznau, N. (2021). Does Sociology Need Open Science? Societies, 11(1), 9", + "link": "https://doi.org/10.3390/soc11010009", + "category": "General" + }, + { + "title": "Open access resources", + "link": "https://researchguides.uoregon.edu/sociology/openaccess", + "category": "Open Methods" + }, + { + "title": "Materials for a Crowdsourced Replication Initiative", + "link": "https://osf.io/bs46f/", + "category": "Open Methods" + }, + { + "title": "Databases", + "link": "http://gss.norc.org/get-the-data", + "category": "Open Data" + }, + { + "title": "Databases", + "link": "https://search.datacite.org/", + "category": "Open Data" + }, + { + "title": "Humanities and Social Science resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Humanities%2520and%2520Social%2520Science", + "category": "Open Data" + }, + { + "title": "Social and Behavioural Science resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Social%2520and%2520Behavioural%2520Science", + "category": "Open Data" + }, + { + "title": "Social Science resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Social%2520Science", + "category": "Open Data" + }, + { + "title": "Preprint repository", + "link": "https://osf.io/preprints/socarxiv", + "category": "Open Outputs" + }, + { + "title": "Simulation code repository", + "link": "https://www.comses.net/", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://journals.sagepub.com/home/soc", + "category": "" + }, + { + "title": "Open Access Journals", + "link": "https://www.frontiersin.org/journals/sociology#", + "category": "" + }, + { + "title": "Open Access Journals", + "link": "https://onlinelibrary.wiley.com/journal/14684446", + "category": "" + }, + { + "title": "Open Access Journals", + "link": "https://www.jasss.org/", + "category": "" + } + ] + }, + { + "name": "Political Science, Politics and International Studies", + "examples": "Open Data: Transparency International (https://www.transparency.org/en/) is a global movement which advocates against corruption through research and campaigning and promotes transparency and accountability through all levels across all sectors of the society. Their publications are open access and include research papers, reports, policy reports which provide specific data for countries and activities, as well as case studies. Toolkits and guides are also available to be used for anti-corruption activities. For example, the Exporting Corruption Progress Report 2020 (https://www.transparency.org/en/publications/exporting-corruption-2020) focuses on foreign bribery focusing on enforcement levels across different countries and how it is affected during the COVID-19 pandemic.", + "resources": [ + { + "title": "Overview guide on open access in Political Science. open-access.network: Open Access in Political Science", + "link": "", + "category": "General" + }, + { + "title": "Article about open research", + "link": "https://www.samuelmoore.org/2019/07/16/why-open-science-is-actually-pretty-good-politics/", + "category": "General" + }, + { + "title": "Elman, C., Kapiszewski, D., and Lupia, A. (2018). Transparent social inquiry: implications for political science. Annual Review of Political Science", + "link": "https://doi.org/10.1146/annurev-polisci-091515-025429", + "category": "General" + }, + { + "title": "Journal Editors Transparency Statement (JETS)", + "link": "https://politicalbehavior.wordpress.com/2015/11/11/statement-on-da-rt-and-the-jets/", + "category": "General" + }, + { + "title": "Move towards open access in Politics", + "link": "https://scholarlykitchen.sspnet.org/2019/12/16/politics-and-open-access/", + "category": "General" + }, + { + "title": "Symposium on ‘Opening Political Science’. , A collection of seven short articles on open research in political and other social science", + "link": "https://www.cambridge.org/core/journals/ps-political-science-and-politics/special-collections/opening-political-science", + "category": "General" + }, + { + "title": "Kapiszewski, D., and Karcher, S. (2019). Transparency in Practice in Qualitative Research. PS: Political Science & Politics, 1-7", + "link": "https://doi.org/10.33774/apsa-2019-if2he-v2", + "category": "General" + }, + { + "title": "Wuttke, A. (2018). Why Too Many Political Science Findings Cannot Be Trusted and What We Can Do About It: A Review of Meta-Scientific Research and a Call for Academic Reform. Polit Vierljahresschr, 60, 1-19", + "link": "https://doi.org/10.1007/s11615-018-0131-7", + "category": "General" + }, + { + "title": "Basile, L., Blair, A., & Buckley, F. (2023). Research transparency and openness. European Political Science, 22(2), 177–181", + "link": "https://doi.org/10.1057/s41304-023-00424-x", + "category": "General" + }, + { + "title": "Bowers, J. (2011). Six steps to a better relationship with your future self. The Political Methodologist, 18(2), 2–8. 10.4067/S0718-090X2016000300011", + "link": "", + "category": "General" + }, + { + "title": "Bowers, J., & Voors, M. (2016). How to improve your relationship with your future self. Revista Ciencia Política, 36(3), 829–848", + "link": "https://doi.org/10.4067/S0718-090X2016000300011", + "category": "General" + }, + { + "title": "Brodeur, A., Esterling, K., Ankel-Peters, J., Bueno, N. S., Desposato, S., Dreber, A., Genovese, F., Green, D. P., Hepplewhite, M., Hoces de la Guardia, F., Johannesson, M., Kotsadam, A., Miguel, E., Velez, Y. R., & Young, L. (2024). Promoting reproducibility and replicability in political science. Research & Politics, 11(1)", + "link": "https://doi.org/10.1177/20531680241233439", + "category": "General" + }, + { + "title": "Closa, C. (2021). Planning, implementing and reporting: Increasing transparency, replicability and credibility in qualitative political science research. European Political Science, 20(2), 270–280", + "link": "https://doi.org/10.1057/s41304-020-00299-2", + "category": "General" + }, + { + "title": "Dyrstad, K., & Moses, J. W. (2023). Big data meets open political science: An empirical assessment of transparency standards 2008–2019. European Political Science, 22(2), 182–201", + "link": "https://doi.org/10.1057/s41304-022-00396-4", + "category": "General" + }, + { + "title": "Scoggins, B., & Robertson, M. P. (2023). Measuring transparency in the social sciences: Political science and international relations (Working Paper 14; I4R Discussion Paper Series). Institute for Replication (I4R)", + "link": "http://hdl.handle.net/10419/268345", + "category": "General" + }, + { + "title": "Open Methods Framework for open observational science", + "link": "https://osf.io/preprints/metaarxiv/udfs9/", + "category": "Open Methods" + }, + { + "title": "Approaches to Open Research for Researchers Using Qualitative Methods", + "link": "https://doi.org/10.33774/apsa-2019-if2he-v2", + "category": "Open Methods" + }, + { + "title": "Alvarez, R. M., & Heuberger, S. (2022). How (not) to reproduce: Practical considerations to improve research transparency in political science. PS: Political Science & Politics, 55(1), 149–154", + "link": "https://doi.org/10.1017/S1049096521001062", + "category": "Open Methods" + }, + { + "title": "Harvard dataverse is an open access data repository. It holds open access data, associated with Research and Politics, an open access publication, published by Sage", + "link": "https://dataverse.harvard.edu/dataverse/researchandpolitics", + "category": "Open Data" + }, + { + "title": "Open political science datasets", + "link": "https://www.poliscidata.com/pages/internationalRelations.php", + "category": "Open Data" + }, + { + "title": "Open public policy digital publication resource", + "link": "https://www.openaccessgovernment.org", + "category": "Open Data" + }, + { + "title": "Open access Political Science articles", + "link": "https://www.cambridge.org/core/journals/british-journal-of-political-science/open-access", + "category": "Open Data" + }, + { + "title": "Open access Political Science articles", + "link": "https://link.springer.com/search?search-within=Journal&facet-journal-id=41304&package=openaccessarticles", + "category": "Open Data" + }, + { + "title": "Human Rights dataset", + "link": "http://www.humanrightsdata.com/p/data-documentation.html", + "category": "Open Data" + }, + { + "title": "Political Science resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Political%2520Science", + "category": "Open Data" + }, + { + "title": "Political Research Exchange (PRX) offers a dynamic platform to advance research, innovation and debate across the breadth of political science. With significant subsidies on the normal upfront costs of Open Access, PRX signals a commitment of the European Consortium for Political Research as a scholarly association to forging a cogent path for the research community at this crucial juncture when academic publishing is becoming fundamentally transformed", + "link": "https://www.tandfonline.com/action/journalInformation?show=aimsScope&journalCode=prxx20", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://preprints.apsanet.org/engage/apsa/public-dashboard", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://osf.io/preprints/socarxiv", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://mediarxiv.org/discover", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://osf.io/preprints/mediarxiv", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://www.gesis.org/en/ssoar/home", + "category": "Open Outputs" + }, + { + "title": "Open access journals for Political Science", + "link": "https://www.longdom.org/political-sciences-public-affairs.html", + "category": "Open Outputs" + }, + { + "title": "Open access journals for Political Science", + "link": "https://www.degruyter.com/view/journals/openps/openps-overview.xml", + "category": "Open Outputs" + }, + { + "title": "Open access journals for Politics", + "link": "https://www.cogitatiopress.com/politicsandgovernance", + "category": "Open Outputs" + }, + { + "title": "Open access journals for Politics", + "link": "https://journals.sagepub.com/home/rap", + "category": "Open Outputs" + }, + { + "title": "Open access journal for International Studies", + "link": "https://www.jois.eu", + "category": "Open Outputs" + }, + { + "title": "Open access journal for International Studies", + "link": "https://www.tandfonline.com/loi/cisp20", + "category": "Open Outputs" + }, + { + "title": "Open access journal for International Studies", + "link": "https://academic.oup.com/ia", + "category": "Open Outputs" + }, + { + "title": "Open educational resources and practices", + "link": "https://www.opolisci.com", + "category": "Open Education" + }, + { + "title": "Open access book for research methods", + "link": "https://ipsrm.com/", + "category": "Open Education" + } + ] + }, + { + "name": "Economics", + "examples": "Open Data: Macroeconomics and studies of international trade require open data sharing and collaboration because informed outcomes require both multiple data sources and equal insights on the policy constraints for each national economy (https://op.europa.eu/s/oGPn). In line with this, there are open access reports on economic change and international trade available (https://ec.europa.eu/info/business-economy-euro_en) as well as open datasets (https://www.wto.org/index.htm).", + "resources": [ + { + "title": "Camerer, C. F., Dreber, A., Forsell, E., Ho, T.-H., Huber, J., Johannesson, M., et al. (2016). Evaluating replicability of laboratory experiments in economics. Science, 351(6280), 1433–1436", + "link": "https://doi.org/10.1126/science.aaf0918", + "category": "General" + }, + { + "title": "Christensen, Garret, and Edward Miguel. 2018. \"Transparency, Reproducibility, and the Credibility of Economics Research.\" Journal of Economic Literature, 56(3), 920-80", + "link": "https://doi.org/10.1257/jel.20171350", + "category": "General" + }, + { + "title": "Hamermesh, D. S. (2007). Replication in Economics. Canadian Journal of Economics, 40(3), 715-733", + "link": "https://doi.org/10.1111/j.1365-2966.2007.00428.x", + "category": "General" + }, + { + "title": "McCullough. B. D. (2009). Open Access Economics Journals and the Market for Reproducible Economic Research. Economic Analysis and Policy, 39(1), 117-126", + "link": "https://doi.org/10.1016/S0313-5926(09", + "category": "General" + }, + { + "title": "Vilhuber, L. (2020). Reproducibility and Replicability in Economics. Harvard Data Science Review, 2(4)", + "link": "https://doi.org/10.1162/99608f92.4f6b9e67", + "category": "General" + }, + { + "title": "Legrand, N. (2022). “The empirical relevance of the competitive storage model” by Cafiero et al. (2011): Replication, robustness, and extension. Applied Economic Perspectives And Policy", + "link": "https://doi.org/10.1002/aepp.13282", + "category": "General" + }, + { + "title": "Miguel, E., Camerer, C., Casey, K., Cohen, J., Esterling, K. M., Gerber, A., ... and Laitin, D. (2014). Promoting transparency in social science research. Science, 343(6166), 30-31", + "link": "https://doi.org/10.1126/science.1245317", + "category": "Open Methods" + }, + { + "title": "Databases", + "link": "https://www.data-archive.ac.uk", + "category": "Open Data" + }, + { + "title": "Databases", + "link": "https://www.economicsnetwork.ac.uk/data_sets", + "category": "Open Data" + }, + { + "title": "Journal of Applied Econometrics Data Archive", + "link": "http://qed.econ.queensu.ca/jae/", + "category": "Open Data" + }, + { + "title": "Certification Agency for Scientific Code and Data", + "link": "https://www.cascad.tech", + "category": "Open Data" + }, + { + "title": "Economics resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Economics", + "category": "Open Data" + }, + { + "title": "Preprint repositories", + "link": "http://www.repec.org", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://www.econstor.eu/dspace/", + "category": "Open Outputs" + }, + { + "title": "National Bureau of Economics Research publications, data, videos", + "link": "https://www.nber.org/papers?page=1&perPage=50&sortBy=public_date", + "category": "Open Outputs" + }, + { + "title": "Wiki-Based Project with Access to Data, Resources and Replications for Empirical Articles", + "link": "https://ia801607.us.archive.org/view_archive.php?archive=/20/items/wiki-replicationuni_goettingende_wiki/replicationuni_goettingende_wiki-20180506-wikidump.7z&file=index.html", + "category": "Open Outputs" + } + ] + }, + { + "name": "Business, Management and Organisation Studies", + "examples": "“There are now thousands of examples of companies having used open government data as a key business asset that have been documented by the Open Data 500, the Open Data Impact Map, the ExploraLatam, and other studies. These projects have illustrated that companies use open government data for business optimisation, for developing new products and services, or for a combination of the two...Data collaboratives represent an emerging model of public–private partnership within which various actors across sectors exchange data and pool analytical expertise...Research partnerships [are an example of date collaboratives], in which corporations share data with universities and other research organisations to map weather patterns and natural resources, for example.”\n(From https://www.stateofopendata.od4d.net/chapters/stakeholders/private-sector.html)\nAcademics within this domain are often encouraged to use the CABS Academic Journal Guide (Not openly accessible, account required) to evaluate the prestige of outlets and publications. Many researchers in business schools are encouraged to pursue publications in outlets ranked 3/4/4* on the list.", + "resources": [ + { + "title": "Francisco, S.A.. (2020). Open Science: Reflections on its Implications for Publishing Business Journals. Revista Administração Em Diálogo, 22. 1-7. Doi:10.23925/2178-0080.2020v22i3.50675", + "link": "", + "category": "General" + }, + { + "title": "Martins, H.C.. (2019). The importance of Open Science in Business research. RAC: Revista de Administraçāo Contemporânea.24(1). Doi: 10.1590/1982-7849rac2020190380", + "link": "", + "category": "General" + }, + { + "title": "Blog about using open data in business", + "link": "http://blog.ukdataservice.ac.uk/how-can-open-data-benefit-business/", + "category": "General" + }, + { + "title": "State of the field: Prosser, A. M., Brown, O., Augustine, G., & Ellis, D. A. (2024, May). It’s time to join the conversation: Visions of the Future for Qualitative Transparency and Openness in Management and Organisation Studies", + "link": "https://doi.org/10.31235/osf.io/ntf73", + "category": "" + }, + { + "title": "State of the field: Prosser, A. M., Brown, O., Augustine, G., & Ellis, D. A. (2024, May). It’s time to join the conversation: Visions of the Future for Qualitative Transparency and Openness in Management and Organisation Studies", + "link": "https://doi.org/10.15626/MP.2022.3271", + "category": "" + }, + { + "title": "O’Boyle, E. H., Banks, G. C., & Gonzalez-Mulé, E. (2017). The Chrysalis Effect: How Ugly Initial Results Metamorphosize Into Beautiful Articles. 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Open Journal of Modelling and Simulation, 11, 99-116", + "link": "https://cran.r-project.org/web/packages/aoristic/index.html", + "category": "Open Methods" + }, + { + "title": "R packages to analyse crime data: Adepeju, M. (2023). “stppSim”: A Novel Analytical Tool for Creating Synthetic Spatio-Temporal Point Data. Open Journal of Modelling and Simulation, 11, 99-116", + "link": "https://github.com/wsteenbeek/NearRepeat", + "category": "Open Methods" + }, + { + "title": "R packages to analyse crime data: Adepeju, M. (2023). “stppSim”: A Novel Analytical Tool for Creating Synthetic Spatio-Temporal Point Data. Open Journal of Modelling and Simulation, 11, 99-116", + "link": "https://github.com/wsteenbeek/lorenzgini", + "category": "Open Methods" + }, + { + "title": "R packages to analyse crime data: Adepeju, M. (2023). “stppSim”: A Novel Analytical Tool for Creating Synthetic Spatio-Temporal Point Data. Open Journal of Modelling and Simulation, 11, 99-116", + "link": "https://github.com/wsteenbeek/sppt", + "category": "Open Methods" + }, + { + "title": "How-to guides published by the European Network for Open Criminology: Ashby, J. (2023). Make sure the world can read your work with open access. European Network for Open Criminology", + "link": "https://esc-enoc.github.io/how-to/open-access.html", + "category": "Open Methods" + }, + { + "title": "How-to guides published by the European Network for Open Criminology: Ashby, J. (2023). Make sure the world can read your work with open access. European Network for Open Criminology", + "link": "https://esc-enoc.github.io/how-to/open-qualitative-criminology.html", + "category": "Open Methods" + }, + { + "title": "How-to guides published by the European Network for Open Criminology: Ashby, J. (2023). Make sure the world can read your work with open access. European Network for Open Criminology", + "link": "https://esc-enoc.github.io/how-to/registered%20reports.html", + "category": "Open Methods" + }, + { + "title": "How-to guides published by the European Network for Open Criminology: Ashby, J. (2023). Make sure the world can read your work with open access. European Network for Open Criminology", + "link": "https://esc-enoc.github.io/how-to/open-partnership.html", + "category": "Open Methods" + }, + { + "title": "How-to guides published by the European Network for Open Criminology: Ashby, J. (2023). Make sure the world can read your work with open access. European Network for Open Criminology", + "link": "https://esc-enoc.github.io/how-to/reproducible-analysis-code.html", + "category": "Open Methods" + }, + { + "title": "Preprint and postprint repository", + "link": "https://www.crimrxiv.com/", + "category": "Open Outputs" + }, + { + "title": "Information about Open Access journals", + "link": "https://www.crimrxiv.com/pub/ql79d70s/release/7", + "category": "Open Outputs" + }, + { + "title": "Information about Diamond Open Access journals", + "link": "https://www.coado.org/", + "category": "Open Outputs" + }, + { + "title": "Journals offering registered reports: Legal and Criminological Psychology", + "link": "https://bpspsychub.onlinelibrary.wiley.com/journal/20448333", + "category": "Open Outputs" + }, + { + "title": "Journals offering registered reports: Legal and Criminological Psychology", + "link": "https://www.apa.org/pubs/journals/lhb", + "category": "Open Outputs" + }, + { + "title": "Framing the problem: Ashby, M.P.J. (2021). The Open-Access Availability of Criminological Research to Practitioners and Policy Makers. Journal of Criminal Justice Education, 32(1), 1-21", + "link": "https://doi.org/10.1080/10511253.2020.1838588", + "category": "Open Outputs" + }, + { + "title": "Open training materials for quantitative crime data analysis: Ashby, M. (2023). Learn crime mapping with R", + "link": "https://books.lesscrime.info/learncrimemapping/", + "category": "Open Education" + }, + { + "title": "Open training materials for quantitative crime data analysis: Ashby, M. (2023). Learn crime mapping with R", + "link": "https://crimebythenumbers.com/", + "category": "Open Education" + }, + { + "title": "Open training materials for quantitative crime data analysis: Ashby, M. (2023). Learn crime mapping with R", + "link": "https://jjmedinaariza.github.io/R-for-Criminologists/", + "category": "Open Education" + }, + { + "title": "Open training materials for quantitative crime data analysis: Ashby, M. (2023). Learn crime mapping with R", + "link": "https://michaelminn.net/tutorials/r-crime/", + "category": "Open Education" + }, + { + "title": "Open training materials for quantitative crime data analysis: Ashby, M. (2023). Learn crime mapping with R", + "link": "https://maczokni.github.io/crime_mapping_textbook/", + "category": "Open Education" + }, + { + "title": "Open training materials for quantitative crime data analysis: Ashby, M. (2023). Learn crime mapping with R", + "link": "https://trainingmodules.ukdataservice.ac.uk/crime/#/", + "category": "Open Education" + } + ] + }, + { + "name": "Leisure/Hospitality and Tourism", + "examples": "Open Methods: MethodsX is an open-access journal where methods used in research studies can be regularly updated by authors and viewed by readers in order to gain precise insight into the methods used and how they could be replicated. An example of its usage is Jillian Student and colleagues’ recent paper which explored the factors affecting coastal tourism using an agent-based modelling approach featuring human-environmental interactions. Specifics of the model can be accessed and viewed on MethodsX.\n(Student, J., Kramer, M. R., and Steinmann, P. (2020). Simulating emerging coastal tourism vulnerabilities: an agent-based modelling approach. Annals of Tourism Research, 85. https://www.sciencedirect.com/science/article/pii/S016073832030178X", + "resources": [ + { + "title": "Brunner-Sperdin, A. and Peters, M. (2005). Importance and Measurement of Entrepreneurial Quality and Processes in Tourism. Journal of Quality Assurance in Hospitality and Tourism, 5(1), 73-90", + "link": "https://doi.org/10.1300/J162v05n01_06", + "category": "General" + }, + { + "title": "Summary of Core Research Resources for Hospitality and Tourism (Including Journals and Data Sets)", + "link": "https://guides.nyu.edu/Hospitality/home", + "category": "General" + }, + { + "title": "Resources required – please complete the Google form (link provided in the introduction) if you can input here", + "link": "", + "category": "Open Methods" + }, + { + "title": "Ardito, L., Cerchione, R., Del Vecchio, P. and Raguseo, E. (2019). Big data in smart tourism: challenges, issues and opportunities. Current Issues in Tourism, 22(15), 1805-1809", + "link": "https://doi.org/10.1080/13683500.2019.1612860", + "category": "Open Data" + }, + { + "title": "Open access journals", + "link": "https://www.longdom.org/tourism-hospitality.html", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://www.mdpi.com/journal/tourismhosp", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://www.journals.elsevier.com/journal-of-hospitality-leisure-sport-and-tourism-education", + "category": "Open Outputs" + }, + { + "title": "Research methods downloadable textbook", + "link": "https://www.academia.edu/36341057/Handbook_of_Research_Methods_for_Tourism_and_Hospitality_Management", + "category": "Open Education" + } + ] + }, + { + "name": "Media and Communication", + "examples": "", + "resources": [ + { + "title": "Dienlin, T., Johannes, N., Bowman, N. D., Masur, P. K., Engesser, S., Kümpel, A. S., Lukito, J., Bier, L. M., Zhang, R., Johnson, B. K., Huskey, R., Schneider, F. M., Breuer, J., Parry, D. A., Vermeulen, I., Fisher, J. T., Banks, J., Weber, R., Ellis, D. A., … de Vreese, C. (2021). An agenda for open science in communication. Journal of Communication, 71(1), 1–26", + "link": "https://doi.org/10.1093/joc/jqz052", + "category": "General" + }, + { + "title": "Lewis, N. A., Jr. (2020). Open communication science: A primer on why and some recommendations for how. Communication Methods and Measures, 14(2), 71–82", + "link": "https://doi.org/10.1080/19312458.2019.1685660", + "category": "General" + }, + { + "title": "Perreault, G., & Dienlin, T. (in press). Normalizing open science practice: Understandings, evaluations, and implementations of open science practices in the field of communication. Journalism & Mass Communication Quarterly", + "link": "https://doi.org/10.1177/10776990241262346", + "category": "General" + }, + { + "title": "van Atteveldt, W., Strycharz, J., Trilling, D., & Welbers, K. (2019). Toward open computational communication science: A practical road map for reusable data and code. International Journal of Communication, 13, 3935–3954", + "link": "https://ijoc.org/index.php/ijoc/article/view/10631", + "category": "General" + }, + { + "title": "OSF. (2019). Osf.io", + "link": "https://osf.io/", + "category": "Open Data" + }, + { + "title": "OSF. (2019). Osf.io", + "link": "https://osf.io/", + "category": "Open Data" + }, + { + "title": "media/rep/ (", + "link": "https://mediarep.org/", + "category": "Open Data" + }, + { + "title": "Harvard Dataverse. (n.d.). Dataverse.harvard.edu", + "link": "https://dataverse.harvard.edu/", + "category": "Open Data" + }, + { + "title": "Harvard Dataverse. (n.d.). Dataverse.harvard.edu", + "link": "https://dataverse.harvard.edu/", + "category": "Open Data" + }, + { + "title": "Gruber, J. B., van Atteveldt, W., & Welbers, K. (2023). Sharing is caring (about research): Three avenues for sharing (copyrighted) text collections and the need for non-consumptive research (7.6). OPTED: Observatory for Political Texts in European Democracies", + "link": "https://opted.eu/fileadmin/user_upload/k_opted/OPTED_Deliverable_D7.6.pdf", + "category": "Open Data" + }, + { + "title": "Ha, L. (2016). Why reviewing manuscripts for JMCQ and posting full research materials online are smart things to do. Journalism & Mass Communication Quarterly, 93(1), 5–15", + "link": "https://doi.org/10.1177/1077699016630320", + "category": "Open Data" + }, + { + "title": "Kim, Y., & Nah, S. (2017). Internet researchers’ data sharing behaviors: An integration of data reuse experience, attitudinal beliefs, social norms, and resource factors. Online Information Review, 42(1), 124–142", + "link": "https://doi.org/10.1108/OIR-10-2016-0313", + "category": "Open Data" + }, + { + "title": "Mancosu, M., & Vegetti, F. (2020). What you can scrape and what is right to scrape: A proposal for a tool to collect public Facebook data. Social Media + Society, 6(3), Article 205630512094070", + "link": "https://doi.org/10.1177/2056305120940703", + "category": "" + }, + { + "title": "GitHub. (n.d.). GitHub. GitHub", + "link": "https://github.com/", + "category": "Open Methods" + }, + { + "title": "GitHub. (n.d.). GitHub. GitHub", + "link": "https://github.com/", + "category": "Open Methods" + }, + { + "title": "OSF. (2024). Osf.io", + "link": "https://osf.io/preprints/socarxiv", + "category": "Open Outputs" + }, + { + "title": "OSF. (2024). Osf.io", + "link": "https://osf.io/preprints/socarxiv", + "category": "Open Outputs" + }, + { + "title": "MediArXiv | The Open Archive for Media, Film, and Communication Studies. (2024). Mediarxiv.com", + "link": "https://mediarxiv.com/", + "category": "Open Outputs" + }, + { + "title": "MediArXiv | The Open Archive for Media, Film, and Communication Studies. (2024). Mediarxiv.com", + "link": "https://mediarxiv.com/", + "category": "Open Outputs" + }, + { + "title": "Collaborative and continuously updated open-access book on access to APIs for collection of text and other online data Bauer, P. C., Landesvatter, C., & Behrens, L. (Eds.). (2022). APIs for social scientists: A collaborative review", + "link": "https://paulcbauer.github.io/apis_for_social_scientists_a_review/", + "category": "Open Education" + } + ] + } + ] + }, + { + "number": 4, + "name": "Humanities", + "summary": "", + "disciplines": [ + { + "name": "Humanities", + "examples": "Open Data: The following are examples of things that could be listed as open data: lists, tables or matrices containing organised, numerical, categorical, and ordinal information (e.g. the population of French medieval cities, a list of participants in the Society of Independent Artists exhibition in 1917, the GDP of European countries before and after Brexit, etc.).\n(Based on information in: https://repository.dri.ie/catalog/tq582c863)\nOpen Data: Objects can also be research data. These include historical artefacts, digital (incl. digitised) documents, images, sound and video recordings (e.g. archaeological finds, medieval manuscripts, poetry texts, social media posts, paintings, recording of a theatre performance).\n(Based on information in: https://repository.dri.ie/catalog/tq582c863)\nOpen Methods: Make the workflow open of how you arrived at your open data from your source. Share or at least indicate, to the greatest extent that you can, the contextual components and contributors to your understanding of the material and realization of your conclusions etc.\n(Based on information in: https://zenodo.org/record/2657248#.Xvxm1yhKhaS)\nOpen Methods and Open Outputs: Establish your sharing rights while you are at the archive, or otherwise accessing sources. Have the documents I need been digitised? If so, how can I obtain digital copies? If not, may I photograph documents myself or order photographs? May I share any photographs I take away? Under what conditions? Under what license(s) (such as the Creative Commons CC-BY)?\n(Based on information in: https://zenodo.org/record/2657248#.Xvxm1yhKhaS)", + "resources": [ + { + "title": "The Digital Research Infrastructure for the Arts and Humanities (DARIAH) aims to enhance and support digitally enabled research and teaching across the arts and humanities", + "link": "https://www.dariah.eu/activities/open-science/dariah-open/", + "category": "General" + }, + { + "title": "Digital Preservation for the Arts, Social Sciences and Humanities biennial conference", + "link": "http://dpassh.org/", + "category": "General" + }, + { + "title": "Research results, data, scientific publications and projects related to the domain of Digital Humanities. This includes Humanities, Cultural Heritage, History, Archaeology and related fields. Includes the following tabs of sharable resources: publications, research data, software, other research", + "link": "https://dh-ch.openaire.eu/", + "category": "General" + }, + { + "title": "Edmond and Tóth-Czifra (2018). Open Data for Humanists, A Pragmatic Guide. Zenodo", + "link": "http://doi.org/10.5281/zenodo.2657248", + "category": "Open Methods" + }, + { + "title": "A guide to data management in the humanities", + "link": "https://allea.org/portfolio-item/sustainable-and-fair-data-sharing-in-the-humanities/", + "category": "Open Data" + }, + { + "title": "DARIAH Research Data Management Working Group", + "link": "https://www.dariah.eu/activities/working-groups/research-data-management/", + "category": "Open Data" + }, + { + "title": "Reference library for data management in humanities", + "link": "https://www.zotero.org/groups/2427138/data_management_best_practices_in_the_humanities/library", + "category": "Open Data" + }, + { + "title": "Blog on Data Sharing in the Humanities Data sharing in the humanities: translating policies into practice (f1000.com)", + "link": "", + "category": "Open Data" + }, + { + "title": "Data repositories: Digital Repository of Ireland -", + "link": "https://dri.ie/", + "category": "" + }, + { + "title": "SAGE Advance (multidisciplinary Humanities and Social Sciences preprint community)", + "link": "https://advance.sagepub.com/", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://www.mdpi.com/journal/humanities", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://www.openlibhums.org/journals/", + "category": "Open Outputs" + }, + { + "title": "Repository", + "link": "https://osf.io/preprints/socarxiv", + "category": "Open Outputs" + }, + { + "title": "Reflections of the Cambridge Working Group on OPen Research in the Humanities", + "link": "https://unlockingresearch-blog.lib.cam.ac.uk/?p=3087", + "category": "Open Outputs" + }, + { + "title": "The HERMES Data Literacy Center – Humanities Education in Research, Data, and Methods (", + "link": "https://hermes-hub.de/", + "category": "Open Education" + } + ] + }, + { + "name": "History", + "examples": "Open Methods: The Institute of Historical Research (IHR) has continuously played a vital role in ensuring open access of history publications with three of their book series having recently gained open access. Meanwhile, they raise awareness on open research by educating current historians via workshops, thus creating discussion opportunities.\n(https://www.history.ac.uk/publications/open-access)", + "resources": [ + { + "title": "IHR’s open access policy and aims", + "link": "https://www.history.ac.uk/publications/open-access", + "category": "General" + }, + { + "title": "The Programming Historian", + "link": "https://programminghistorian.org/", + "category": "General" + }, + { + "title": "IHR’s list of open access resources", + "link": "https://www.history.ac.uk/library/collections/online-resources/open-access-resources", + "category": "Open Methods" + }, + { + "title": "Archaeology Dataset", + "link": "https://openarchaeologydata.metajnl.com/articles/10.5334/joad.57/", + "category": "Open Data" + }, + { + "title": "Archaeology Data Service", + "link": "https://archaeologydataservice.ac.uk/", + "category": "Open Data" + }, + { + "title": "History resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=History", + "category": "Open Data" + }, + { + "title": "Royal Historical Society guide to open access", + "link": "https://royalhistsoc.org/early-career-historians/open-access/", + "category": "Open Outputs" + }, + { + "title": "Preprint repository", + "link": "https://osf.io/preprints/socarxiv", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://www.cambridge.org/core/journals/historical-journal/open-access", + "category": "Open Outputs" + }, + { + "title": "Open Access Journals", + "link": "https://www.journals.uchicago.edu/journals/jmh/open", + "category": "Open Outputs" + } + ] + }, + { + "name": "Archaeology and Classics", + "examples": "Open Methods: “One of the most promising vector-based information to be made available on the web is an eXtensible Markup Language (XML)-based solution called Scalable Vector Graphics (SVG). SVG was defined by a working group of the World Wide Web Consortium (W3C) and has subsequently become their official recommendation for representing vector graphics on the Web in XML (Eisenberg 2002, 6; Watt 2002, xviii). Because SVG is an XML application, it is freely available, not dependent on a particular browser or platform, and interoperable with other XML applications. Large-scale plan and section drawings originally created on Permatrace were digitised by Guy Hopkinson for use in the Internet Archaeology publication Excavations at Cricklade, Wiltshire, 1975, by Jeremy Haslam, designed as an exercise in 'retrospective publication', to illustrate how traditional forms of visual recording might be digitised for online publications.”\n(https://intarch.ac.uk/journal/issue20/wright_index.html)", + "resources": [ + { + "title": "Marwick. B, et al. (2017). Open Science in Archaeology. SAA Archaeological Records, 17(4), 8-14", + "link": "https://doi.org/10.31235/osf.io/72n8g", + "category": "General" + }, + { + "title": "Huggett, J. (2017). Reuse remix recycle: repurposing archaeological digital data. Advances in Archaeological Practice, 6(2), 93-104", + "link": "https://doi.org/10.1017/aap.2018.1", + "category": "General" + }, + { + "title": "Karoune and Plomp (2022). Removing Barriers to Reproducible Research in Archaeology (Version v2). Zenodo", + "link": "https://doi.org/10.5281/zenodo.6618672", + "category": "General" + }, + { + "title": "Presentation on Registered Reports in Archaeology", + "link": "https://osf.io/6ehfq", + "category": "General" + }, + { + "title": "Papers covering open methods in Archaeology", + "link": "https://core.tdar.org/collection/29739/open-methods-in-archaeology-how-to-encourage-reproducible-research-as-the-default-practice", + "category": "Open Methods" + }, + { + "title": "Open methods and resources", + "link": "https://archaeologicalnetworks.wordpress.com/resources/", + "category": "Open Methods" + }, + { + "title": "Archaeology data service", + "link": "https://archaeologydataservice.ac.uk/", + "category": "Open Data" + }, + { + "title": "Open access data", + "link": "https://opencontext.org/", + "category": "Open Data" + }, + { + "title": "Open access data", + "link": "https://core.tdar.org/", + "category": "Open Data" + }, + { + "title": "Open access data", + "link": "https://homer.library.northwestern.edu/splash.html", + "category": "Open Data" + }, + { + "title": "Open software", + "link": "https://github.com/benmarwick/ctv-archaeology", + "category": "Open Data" + }, + { + "title": "Open software", + "link": "https://open-archaeo.info/", + "category": "Open Data" + }, + { + "title": "Marwick, B., & Birch, S. (2018). A Standard for the Scholarly Citation of Archaeological Data as an Incentive to Data Sharing. Advances in Archaeological Practice, 6(2), 125-143", + "link": "https://doi.org/10.1017/aap.2018.3", + "category": "Open Data" + }, + { + "title": "University of Sheffield discipline-specific guidance on how to make research data and software FAIR (findable, accessible, interoperable & reusable). This pilot was conducted in seven departments across the University: Architecture, Biosciences, English, Geography, Mechanical Engineering, Psychology, and the School of Health and Related Research. You can find the full set of checklists from the pilot departments here", + "link": "https://doi.org/10.15131/shef.data.20496855.v2", + "category": "Open Data" + }, + { + "title": "Archaeology resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Archaeology", + "category": "Open Data" + }, + { + "title": "Preprint repository", + "link": "https://osf.io/preprints/socarxiv/discover", + "category": "Open Outputs" + }, + { + "title": "Preprint repository", + "link": "https://isoarch.eu/", + "category": "Open Outputs" + }, + { + "title": "Preprint repository", + "link": "https://archaeo.peercommunityin.org/", + "category": "Open Outputs" + }, + { + "title": "Open Access journal/data/catalogue", + "link": "https://intarch.ac.uk/", + "category": "Open Outputs" + }, + { + "title": "Open Access journal/data/catalogue", + "link": "https://openarchaeologydata.metajnl.com/", + "category": "Open Outputs" + }, + { + "title": "Open Access journal/data/catalogue", + "link": "https://www.degruyter.com/view/journals/", + "category": "Open Outputs" + }, + { + "title": "Open Access journal/data/catalogue", + "link": "https://spotlight.vatlib.it/", + "category": "Open Outputs" + }, + { + "title": "Open Access journal/data/catalogue", + "link": "https://www.hcsjournal.org/ojs/index.php/hcs", + "category": "Open Outputs" + }, + { + "title": "Open Access journal/data/catalogue", + "link": "https://propylaeum.de/home", + "category": "Open Outputs" + }, + { + "title": "Open Access journal/data/catalogue", + "link": "https://academic.oup.com/bics/issue", + "category": "Open Outputs" + } + ] + }, + { + "name": "Philosophy, Theology and Religious Studies", + "examples": "Open Data: Open text and open images. For example, “Hume Texts Online is a free and open access collection of works...[which] includes every philosophical text that Hume published, in accurate editions that faithfully represent the original 18th century publications, but without neglecting the advantages of modern online texts...Thanks to the National Library of Scotland and the Royal Society of Edinburgh, we are also able to reproduce here high-quality digital images of Hume’s manuscript of the Dialogues concerning Natural Religion. These pages are made available alongside the text of the first posthumous 1779 edition.” (https://davidhume.org/)", + "resources": [ + { + "title": "Open Access Resources in Religious and Theological Studies: Getting Started", + "link": "https://guides.library.duke.edu/openreligion", + "category": "General" + }, + { + "title": "Detailed overview of current progress towards open access literature. open-access.network: Open Access in Philosophy", + "link": "", + "category": "Open Methods" + }, + { + "title": "Open Communication Science: A primer on why and some recommendations for how", + "link": "https://osf.io/preprints/mediarxiv", + "category": "Open Methods" + }, + { + "title": "Hume texts online", + "link": "https://davidhume.org/", + "category": "Open Data" + }, + { + "title": "Archive data", + "link": "https://thearda.com/", + "category": "Open Data" + }, + { + "title": "Philosophy resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Philosophy", + "category": "Open Data" + }, + { + "title": "Religious Studies resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Religious%2520Studies", + "category": "Open Data" + }, + { + "title": "Theology resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Theology", + "category": "Open Data" + }, + { + "title": "List of open access journals", + "link": "https://libguides.du.edu/c.php?g=131579&p=2774089", + "category": "Open Outputs" + }, + { + "title": "List of open access journals", + "link": "https://www.degruyter.com/view/journals/opth/opth-overview.xml", + "category": "Open Outputs" + }, + { + "title": "Open access guide", + "link": "https://umb.libguides.com/c.php?g=350815&p=2468261", + "category": "Open Outputs" + }, + { + "title": "Open access resources on the Muslim world", + "link": "https://archnet.org/", + "category": "Open Outputs" + }, + { + "title": "Theological studies journal search", + "link": "https://cse.google.com/cse?cx=018443097211386924752:luwi5uy2qbe", + "category": "Open Outputs" + }, + { + "title": "Preprint repository", + "link": "http://philsci-archive.pitt.edu/", + "category": "Open Outputs" + }, + { + "title": "Open access archive", + "link": "https://philpapers.org/", + "category": "Open Outputs" + } + ] + }, + { + "name": "Modern Language, Literature and Linguistics", + "examples": "Open Methods: Language and Cognition field manuals and stimulus materials from the Max Planck Institute for Psycholinguistics (http://fieldmanuals.mpi.nl/) provide an example of open resources and historical data for the fields of elicitation of semantics and collection of verbal behaviour. Due to the open nature of the tasks, they have been refined over many uses, which makes them a “joint product of many scholars working in over 50 languages and cultures.” The use of these materials can be coupled with open data from earlier uses, for comparison.\nOpen Data: The Arts and Humanities Research Council (AHRC) requires the production of a technical plan for any project it funds in which digital technologies play a significant part. Asa case study of this, Francesca Benatti worked on a project creating a searchable database, curated mostly from existing resources. She was required to produce a technical plan for the project, outlining the methodology, any technical support needed, the planned outputs, and a plan for the preservation, sustainability and future use of the project.\n(See https://www.dcc.ac.uk/resources/developing-rdm-services/dmps-arts-and-humanities)", + "resources": [ + { + "title": "Guide on transitioning to open access", + "link": "https://www.lingoa.eu/about/mission/", + "category": "General" + }, + { + "title": "A collection of instruments, materials, stimuli, and data coding and analysis tools used for research into second languages", + "link": "https://www.iris-database.org/iris/app/home/index", + "category": "General" + }, + { + "title": "Encyclopaedia of linguistics", + "link": "http://www.glottopedia.org/index.php/Main_Page", + "category": "General" + }, + { + "title": "Marsden, E., Morgan‐Short, K., Trofimovich, P., & Ellis, N. C. (2018). Introducing registered reports at language learning: Promoting transparency, replication, and a synthetic ethic in the language sciences. Language Learning, 68(2), 309-320", + "link": "https://doi.org/10.1111/lang.12284", + "category": "General" + }, + { + "title": "Marsden, E., Crossley, S., Ellis, N., Kormos, J., Morgan‐Short, K., & Thierry, G. (2019). Inclusion of research materials when submitting an article to language learning. Language Learning, 69(4), 795-801", + "link": "https://doi.org/10.1111/lang.12378", + "category": "General" + }, + { + "title": "AHRC’s open access policy rationale", + "link": "https://www.ukri.org/publications/ukri-open-access-policy/uk-research-and-innovation-open-access-policy/", + "category": "General" + }, + { + "title": "Paper outlining how methods can be made more open to the public", + "link": "https://doi.org/10.1111/lang.12337", + "category": "Open Methods" + }, + { + "title": "Sharing linguistic questionnaires and elicitation stimuli", + "link": "http://tulquest.huma-num.fr/", + "category": "Open Methods" + }, + { + "title": "Language and Cognition field manuals and stimulus materials", + "link": "http://fieldmanuals.mpi.nl/", + "category": "Open Methods" + }, + { + "title": "Tools for analysing language corpora", + "link": "http://corpora.lancs.ac.uk/lancsbox/", + "category": "Open Methods" + }, + { + "title": "Tools for analysing corpus linguistic data", + "link": "https://www.laurenceanthony.net/software/antconc/", + "category": "Open Methods" + }, + { + "title": "Website for statistical analysis", + "link": "http://langtest.jp/", + "category": "Open Methods" + }, + { + "title": "University of Sheffield discipline-specific guidance on how to make research data and software FAIR (findable, accessible, interoperable & reusable). This pilot was conducted in seven departments across the University: Architecture, Biosciences, English, Geography, Mechanical Engineering, Psychology, and the School of Health and Related Research. You can find the full set of checklists from the pilot departments here", + "link": "https://doi.org/10.15131/shef.data.20496855.v2", + "category": "Open Methods" + }, + { + "title": "Reproducible research practices and transparency across linguistics", + "link": "https://escholarship.org/uc/item/6m62j7p6", + "category": "Open Methods" + }, + { + "title": "Tromsø Recommendations for Citation of Research Data in Linguistics", + "link": "https://doi.org/10.15497/RDA00040", + "category": "Open Methods" + }, + { + "title": "List of data repositories", + "link": "https://guides.lib.ku.edu/c.php?g=94923&p=1224538", + "category": "Open Data" + }, + { + "title": "Child Language Data Exchange System", + "link": "https://childes.talkbank.org/", + "category": "Open Data" + }, + { + "title": "Open data texts", + "link": "https://www.english-corpora.org/", + "category": "Open Data" + }, + { + "title": "British Library Digital Collections and Data", + "link": "https://bl.iro.bl.uk", + "category": "Open Data" + }, + { + "title": "Collection of Datasets for Natural Language Processing", + "link": "https://medium.com/@ODSC/20-open-datasets-for-natural-language-processing-538fbfaf8e38", + "category": "Open Data" + }, + { + "title": "Linguistics resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Linguistics", + "category": "Open Data" + }, + { + "title": "List of open access resources for modern languages", + "link": "https://www.modernlanguagesopen.org/", + "category": "Open Outputs" + }, + { + "title": "Guides to open access for linguistics", + "link": "http://www.lagb.org.uk/OpenAccess", + "category": "Open Outputs" + }, + { + "title": "Guides to open access for linguistics", + "link": "http://humans-who-read-grammars.blogspot.com/p/open-access-publishing-in.html", + "category": "Open Outputs" + }, + { + "title": "Guides to open access for linguistics", + "link": "https://ling.auf.net/", + "category": "Open Outputs" + }, + { + "title": "List of platinum open access linguistics journals", + "link": "https://oaling.wordpress.com/", + "category": "Open Outputs" + }, + { + "title": "Lists of open access resources for literature", + "link": "https://libguides.tyndale.ca/c.php?g=315370&p=2107755", + "category": "Open Outputs" + }, + { + "title": "Lists of open access resources for literature", + "link": "https://libguides.southernct.edu/c.php?g=721855&p=5148244", + "category": "Open Outputs" + }, + { + "title": "Lists of open access resources for literature", + "link": "https://libguides.library.ohio.edu/c.php?g=37633&p=712070", + "category": "Open Outputs" + }, + { + "title": "OASIS database repository", + "link": "https://oasis-database.org/", + "category": "Open Outputs" + } + ] + }, + { + "name": "Art and Design", + "examples": "Open Outputs: The National Gallery of Art (NGA) is a key example of a gallery that is gradually opening its resources for the public to use freely. This is in the format of an online repository named ‘NGA Images’ with the following terms: “NGA Images is a repository of digital images of the collections of the National Gallery of Art. On this website you can search, browse, share, and download images. A standards-based reproduction guide and a help section provide advice for both novices and experts. More than 45,000 open access digital images up to 4000 pixels each are available free of charge for download and use. NGA Images is designed to facilitate learning, enrichment, enjoyment, and exploration.” As well as providing staff and external users with simplified access to research material, the move to open access has resulted in an increased awareness of the gallery’s collections, thus highlighting the advantages of open research.\n(https://images.nga.gov/en/page/show_home_page.html)\nOpen Data: The Concordat on Open Research Data defines research data as “evidence that underpins the answer to the research question” which “can be used to validate findings” (UKRI, 2016). In 2021, the Practice Research Advisory Group (PRAG) recommended that practice-based research datasets could include items such as notebooks, work in progress sound recordings, score drafts, storyboards, and interview transcripts (Bulley & Sahin, 2021).\nLeeds Arts University supports its researchers to make their research data as open as possible and as closed as necessary (Leeds Arts University, 2024). An example of one such researcher is Garry Barker, who has deposited sketchbooks relating to his practice-based arts research outputs as open research data on Zenodo under CC BY (Barker, 2024a; Barker, 2024b; Barker, 2024c). These sketchbook datasets are open online archives of Barker’s preliminary work, allowing users free access to underpinning information instrumental to his methodologies and thinking.", + "resources": [ + { + "title": "Benefits of open access for art and design scholarships", + "link": "https://blogs.openbookpublishers.com/the-monograph-crisis-open-access-for-art-and-design-scholarship/", + "category": "General" + }, + { + "title": "Leeds Arts University. (2024). Open Research Policy", + "link": "https://www.leeds-art.ac.uk/research/concordat-on-open-research-data", + "category": "General" + }, + { + "title": "UK Research and Innovation. (2016). Concordat on Open Research Data", + "link": "https://www.ukri.org/wp-content/uploads/2020/10/UKRI-020920-ConcordatonOpenResearchData.pdf", + "category": "General" + }, + { + "title": "Blog post exploring research data in the creative arts", + "link": "https://researchdata.jiscinvolve.org/wp/2016/11/22/research-data-creative-performing-arts/", + "category": "General" + }, + { + "title": "Boisseau, É., Omhover, J. F., and Bouchard, C. (2018). Open-design: A state of the art review. Design Science, 4", + "link": "https://doi.org/10.1017/dsj.2017.25", + "category": "Open Methods" + }, + { + "title": "Open-source design publishing software", + "link": "https://www.scribus.net", + "category": "Open Methods" + }, + { + "title": "Bulley, J., & Sahin, O. (2021). Practice Research - Report 1: What is practice research? and Report 2: How can practice research be shared? Practice Research Advisory Group UK (PRAG-UK)", + "link": "https://doi.org/10.23636/1347", + "category": "Open Methods" + }, + { + "title": "UKRN Professional and Technical Staff supporting Open Research: Case Study 5, Practice-based arts research project", + "link": "https://osf.io/a2r5p", + "category": "" + }, + { + "title": "Art resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Art", + "category": "Open Data" + }, + { + "title": "Fine Art resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Fine%2520Arts", + "category": "Open Data" + }, + { + "title": "Barker, G. (2024a). Garry Barker Working sketchbook. Zenodo", + "link": "https://doi.org/10.5281/zenodo.14013103", + "category": "Open Data" + }, + { + "title": "Barker, G. (2024b). Ideas development sketchbook. Zenodo", + "link": "https://doi.org/10.5281/zenodo.13827974", + "category": "Open Data" + }, + { + "title": "Barker, G. (2024c). Working sketchbook (Observational drawings with notes). Zenodo", + "link": "https://doi.org/10.5281/zenodo.13684033", + "category": "Open Data" + }, + { + "title": "Open access journals", + "link": "https://openartsjournal.org", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "http://www.19thc-artworldwide.org/spring19/", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://www.intellectbooks.com/artifact-journal-of-design-practice", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://www.jar-online.net", + "category": "Open Outputs" + }, + { + "title": "Open art images repository", + "link": "https://images.nga.gov/en/page/show_home_page.html", + "category": "Open Outputs" + }, + { + "title": "Open Access University Repositories", + "link": "https://research.uca.ac.uk/", + "category": "Open Outputs" + }, + { + "title": "Open Access University Repositories", + "link": "http://radar.gsa.ac.uk/", + "category": "Open Outputs" + }, + { + "title": "Open Access University Repositories", + "link": "https://lau.repository.guildhe.ac.uk/", + "category": "Open Outputs" + }, + { + "title": "Open Access University Repositories", + "link": "https://norwichuni.repository.guildhe.ac.uk/", + "category": "Open Outputs" + }, + { + "title": "Open Access University Repositories", + "link": "https://rave.repository.guildhe.ac.uk/", + "category": "Open Outputs" + }, + { + "title": "Open Access University Repositories", + "link": "https://research.aub.ac.uk/", + "category": "Open Outputs" + }, + { + "title": "Visual arts data skills for researchers", + "link": "http://www.vads4r.vads.ac.uk/p/online-learning.html", + "category": "Open Outputs" + } + ] + }, + { + "name": "Music, Drama and Performing Arts, Film and Screen Studies", + "examples": "Open Data: “MusicLab is an innovation project by RITMO (http://www.uio.no/ritmo) and the University Library (http://ub.uio.no/). The aim is to explore new methods for conducting research, research communication and education. The project is organized around events: a concert in a public venue, which is also the object of study. The events also contain an edutainment element through panel discussions with world-leading researchers and artists, as well ‘data jockeying’ in the form of live data analysis of recorded data.” This up-and-coming project namely merges the study of music with physiology using various types of technologies measuring bodily responses. All resources (including data findings) are fully free and available to everyone due to the project’s aims of exploring Open Science within research and research-based education.\n(https://www.uio.no/ritmo/english/news-and-events/events/musiclab/)", + "resources": [ + { + "title": "Podcast on how music research can be made more open", + "link": "https://www.arj.no/2020/01/09/podcast-on-open-research/", + "category": "General" + }, + { + "title": "Paper on a new open-source application for musical recording analysis. Cannam, C., Landone, C., and Sandler, M. (2010). Sonic visualiser: an open-source application for viewing, analysing, and annotating music audio files. Association for Computing Machinery, 1467-1468", + "link": "https://doi.org/10.1145/1873951.1874248", + "category": "Open Methods" + }, + { + "title": "Resource facilitating music data reusability", + "link": "http://soundsoftware.ac.uk/", + "category": "Open Data" + }, + { + "title": "Musicology resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Musicology", + "category": "Open Data" + }, + { + "title": "Media Studies resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Media%2520Studies", + "category": "Open Data" + }, + { + "title": "Theatre Studies resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Theatre%2520Studies", + "category": "Open Data" + }, + { + "title": "Open film studies preprint archive", + "link": "https://mediarxiv.com", + "category": "Open Outputs" + }, + { + "title": "Performing arts journal", + "link": "https://cnu.edu/jpalhe/", + "category": "Open Outputs" + }, + { + "title": "Performing arts digital books", + "link": "https://www.doabooks.org/doab?func=subject&cpId=7&uiLanguage=en", + "category": "Open Outputs" + }, + { + "title": "Musical performance journal", + "link": "https://scholarship.claremont.edu/ppr/", + "category": "Open Outputs" + } + ] + }, + { + "name": "Cultural and Media Studies", + "examples": "Open Data: The Database of Places, Language, Culture and Environment (D-PLACE) is an expandable and open-access resource which combines data from over 1400 human societies in terms of their language, culture and environment. Drawing upon the current barrier to fully comprehending cultural diversity due to inaccessible repositories, D-PLACE helps to combat this by providing: “i) location of relevant cultural data, (ii) linking data from distinct sources using diverse ethnonyms, (iii) variable time and place foci for data, and (iv) spatial and historical dependencies among cultural groups that present challenges for analysis.” Data is available in an easily downloadable format (e.g., tables, maps and linguistic trees). With the possibility for researchers to utilise large-scale phylogenetic analyses, one key field that can benefit from this is the study of cultural evolution.\n(https://doi.org/10.1371/journal.pone.0158391)", + "resources": [ + { + "title": "Overview of progression towards open research", + "link": "https://mediastudies.hypotheses.org/867", + "category": "General" + }, + { + "title": "Introduction to Open Science/Research for communication scholars", + "link": "https://doi.org/10.1093/joc/jqz052", + "category": "General" + }, + { + "title": "Introduction to Open Science/Research for communication scholars", + "link": "https://doi.org/10.1080/19312458.2019.1685660", + "category": "General" + }, + { + "title": "Presentations about Open Communication regarding research papers, roundtables and workshops", + "link": "https://www.youtube.com/channel/UCLfQ-LCjJMfiFCOEG7e6hkA/playlists", + "category": "General" + }, + { + "title": "Resources required – please complete the Google form (link provided in the introduction) if you can input here", + "link": "", + "category": "Open Methods" + }, + { + "title": "Open database on human culture practices", + "link": "https://d-place.org/contributions", + "category": "Open Data" + }, + { + "title": "Culture resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Culture", + "category": "Open Data" + }, + { + "title": "Open access repositories/archives", + "link": "https://mediarep.org/", + "category": "Open Outputs" + }, + { + "title": "Open access repositories/archives", + "link": "https://mediarep.org/handle/doc/15273", + "category": "Open Outputs" + }, + { + "title": "Open access repositories/archives", + "link": "https://sciendo.com/journal/JCBTP", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://journal.media-culture.org.au/index.php/mcjournal", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "http://www.transformationsjournal.org", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://csalateral.org/archive/", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://csalateral.org/archive/", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://journals.sagepub.com/home/sms", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://www.degruyter.com/view/journals/culture/culture-overview.xml", + "category": "Open Outputs" + }, + { + "title": "Preprint repository", + "link": "https://mediarxiv.com", + "category": "Open Outputs" + } + ] + } + ] + }, + { + "number": 5, + "name": "Engineering and Technology", + "summary": "", + "disciplines": [ + { + "name": "Engineering (including Electrical, Civil, Environmental, Chemical and Mechanical Engineering)", + "examples": "Open Data: “Nikola Vasiljević works with unique measurement data of the wind field behind wind turbines, or wake. Having FAIR (Findable, Accessible, Interoperable, Reusable) data is essential to his field, because this kind of data has a high potential to be reused for many decades, from the very first day they are created.”\n(From https://howtofair.dk/how-to-fair/#engineering)", + "resources": [ + { + "title": "Munafò, M., Noble, S., Browne, W. et al. (2014). Scientific rigor and the art of motorcycle maintenance. Nat Biotechnol 32, 871–873", + "link": "https://doi.org/10.1038/nbt.3004", + "category": "General" + }, + { + "title": "Detection and Classification of Acoustic Scenes and Events. Community dashboard of workshops, news and challenges. Includes blog about change in practice (civil/environmental)", + "link": "http://dcase.community/", + "category": "General" + }, + { + "title": "Manifesto about sharing data (electrical/electronic)", + "link": "https://theodi.org/article/engineering-data-for-the-public-good-a-manifesto/#1570462630418-fc70c0a6-7ac3", + "category": "General" + }, + { + "title": "Resource guiding researchers on relevant computer skills via regular workshops", + "link": "https://software-carpentry.org", + "category": "Open Methods" + }, + { + "title": "University of Sheffield discipline-specific guidance on how to make research data and software FAIR (findable, accessible, interoperable & reusable). This pilot was conducted in seven departments across the University: Architecture, Biosciences, English, Geography, Mechanical Engineering, Psychology, and the School of Health and Related Research. You can find the full set of checklists from the pilot departments here", + "link": "https://doi.org/10.15131/shef.data.20496855.v2", + "category": "Open Methods" + }, + { + "title": "The SoundSoftware project provides facilities, training, tools and incentives to improve the publication and reuse of scientific software and data in the UK audio and music research community", + "link": "http://soundsoftware.ac.uk/", + "category": "Open Data" + }, + { + "title": "Institution of Engineering and Technology’s (IET) prospective move to open access", + "link": "https://www.theiet.org/publishing/publishing-with-iet-journals/transitioning-to-open-access-faq-s-for-authors#:~:text=From%20January%202021%2C%20all%20articles,to%20a%20CC%2DBY%20licence", + "category": "Open Data" + }, + { + "title": "The Software Sustainability Institute facilitates progression towards more sustainable research software", + "link": "https://www.software.ac.uk/about", + "category": "Open Data" + }, + { + "title": "Open hardware repository", + "link": "https://gitlab.com/ohwr", + "category": "Open Data" + }, + { + "title": "Open access tools for data analysis", + "link": "https://opensource.com/", + "category": "Open Data" + }, + { + "title": "Open-source micro-controller (electrical/electronic)", + "link": "https://www.arduino.cc", + "category": "Open Data" + }, + { + "title": "Open data repository", + "link": "https://data.4tu.nl/info/en/", + "category": "Open Data" + }, + { + "title": "Engineering Science resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Engineering%2520Science", + "category": "Open Data" + }, + { + "title": "Open-source 3D printing toolbox data (mechanical)", + "link": "https://slic3r.org", + "category": "Open Outputs" + }, + { + "title": "Open electronics supports development, hacking and playing with electronics: they share open projects and create products", + "link": "https://www.open-electronics.org/about/", + "category": "Open Outputs" + }, + { + "title": "The Open-Source Hardware Association (OSHWA) aims to foster technological knowledge and encourage research that is accessible, collaborative and respects user freedom. Hosts annual Open Hardware Summit and maintains Open-Source Hardware certification", + "link": "https://www.oshwa.org/", + "category": "Open Outputs" + }, + { + "title": "Guidelines on creating open hardware", + "link": "https://opensource.com/article/18/2/5-steps-creating-successful-open-hardware", + "category": "Open Outputs" + }, + { + "title": "Pearce, J. M. (2015) Quantifying the Value of Open-Source Hardware Development. Modern Economy, 6, 1-11", + "link": "https://doi.org/10.4236/me.2015.61001", + "category": "Open Outputs" + }, + { + "title": "Open access journals (civil/environmental)", + "link": "https://opencivilengineeringjournal.com/", + "category": "Open Outputs" + }, + { + "title": "Open access journals (civil/environmental)", + "link": "https://openbioresources.metajnl.com", + "category": "Open Outputs" + }, + { + "title": "Open access journals (civil/environmental)", + "link": "https://www.degruyter.com/view/journals/eng/eng-overview.xml", + "category": "Open Outputs" + }, + { + "title": "Open access journals (mechanical). International Journal of Innovative Research in Science, Engineer (rroij.com)", + "link": "https://www.omicsonline.org/architectural-engineering-technology.php", + "category": "Open Outputs" + }, + { + "title": "Open access journals (chemical). International Journal of Innovative Research in Science, Engineer (rroij.com)", + "link": "https://www.omicsonline.org/analytical-bioanalytical-techniques.php", + "category": "Open Outputs" + }, + { + "title": "Open-source software for engineering and other sciences", + "link": "https://openfoam.com/", + "category": "Open Outputs" + }, + { + "title": "Preprint repository", + "link": "https://engrxiv.org/", + "category": "Open Outputs" + }, + { + "title": "Database of open access engineering books, magazines, journals and conferences", + "link": "https://ieeexplore.ieee.org/Xplore/home.jsp", + "category": "Open Education" + } + ] + }, + { + "name": "Architecture, Built Environment and Planning", + "examples": "Open Methods: “The OS (OpenStructures) project (http://www.openstructures.net/) explores the possibility of a modular construction model where everyone designs for everyone on the basis of one shared geometrical grid. It initiates a kind of collaborative MECCANO© to which everyone can contribute parts, components and structures.” Described as a “three-dimensional open-source code from our built environment”, this ecosystem explores the idea of designing hardware in the way we design software by having different individuals contribute to one main model as opposed to working on separate entities. This concept has been applied to developing societies within Katanga, Congo in the form of humanitarian architecture by recycling, upcycling and reusing goods as a way of strengthening the local economy.\n(http://studies.bc-as.org/case-study-1-katanga-congo)", + "resources": [ + { + "title": "Resources required – please complete the Google form (link provided in the introduction) if you can input here", + "link": "", + "category": "General" + }, + { + "title": "Open modular construction system", + "link": "https://www.openstructures.net", + "category": "Open Methods" + }, + { + "title": "Image library resource for architecture projects", + "link": "https://www.architecture.com/image-library/", + "category": "Open Data" + }, + { + "title": "Architecture resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Architecture", + "category": "Open Data" + }, + { + "title": "Civil Engineering resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Civil%2520Engineering", + "category": "Open Data" + }, + { + "title": "List of open access resources", + "link": "https://guides.library.upenn.edu/architecture/openaccess", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://journal.eahn.org", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://www.sciencedirect.com/journal/frontiers-of-architectural-research", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://built-heritage.springeropen.com", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://www.buildingsandcities.org", + "category": "Open Outputs" + }, + { + "title": "Open access journals", + "link": "https://journals.open.tudelft.nl/abe", + "category": "Open Outputs" + }, + { + "title": "Open access intellectual resource on Muslim architecture", + "link": "https://archnet.org", + "category": "Open Outputs" + } + ] + }, + { + "name": "Computer Science", + "examples": "General: The Open Science Grid (OSG) is a large-scale computational infrastructure based in the United States and partly funded by the Department of Energy. Having been applied to highly reputable experiments such as the Large Hadron Collider, the OSG holds an invaluable role in supporting a variety of scientific applications by providing service and support to resource providers and research institutions. This is achieved by allowing contributors to grant access to their computing, storage and software resources which promotes usage of shared data and resources. With aims to expand further globally, the OSG plays a key role in ensuring a collaborative environment for scientists and researchers working on computing issues and solutions development as well as guiding new, less experienced users in the computing community. (https://opensciencegrid.org)\nGeneral: Good computing workflow practices. Summarised in Box 1 of Wilson et al. (2017). For example:\n“Software\nPlace a brief explanatory comment at the start of every program.\nDecompose programs into functions.\nBe ruthless about eliminating duplication.\nAlways search for well-maintained software libraries that do what you need.\nTest libraries before relying on them.\nGive functions and variables meaningful names.\nMake dependencies and requirements explicit.\nDo not comment and uncomment sections of code to control a program's behaviour.\nProvide a simple example or test data set.\nSubmit code to a reputable DOI-issuing repository.”\nOpen Data and Open Education: Tim Coughlan from The Open University provides his case study of postgraduate computer science in using open data as a material for describing the process of producing assignments, and learner responses to them. He views open data as a powerful material for designing learning activities because of its qualities of ease of access and authenticity. As assignments, students used e-book text files which required them to build an e-reader application. They were then given a set of requirements that progressed from the basic creation of the application, towards challenging them to make use of the data that is available that suits them in complex ways. Feedback from the assignments shows that students responded well to the assignments and reported a high degree of satisfaction.\n(http://education.okfn.org/handbooks/open-data-as-open-educational-resources/)\nOpen Outputs and Open Data: CHI (https://chi2026.acm.org/authors/papers/#acm-open) and SOUPS (https://soups.page/cfp.html) introduced full open access starting in 2026, with the options for authors to publish preprints. SOUPS introduced the Research Transparency Guidelines (https://transparency-guide.teamusec.de/) in 2026, suggesting authors to publish data as FAIR as possible.\nOpen Methods: Tang et al. (2025) found that 65% of papers published in SOUPS from 2004-2024 are affected by statistical validity issues. They provide recommendations for test selection, reporting, and interpretation.\nOpen Methods: Martius et al. (2025) found that researchers across Human Computer Interaction have difficulties adhering to Data Management Plans (DMPs), which are required to handle user data. They give concrete recommendations for researchers to follow when doing research with sensitive information.", + "resources": [ + { + "title": "Fernández, D. M., Graziotin, D., Wagner, S., and Seibold, H. (2019). Open science in software engineering", + "link": "https://arxiv.org/abs/1904.06499", + "category": "General" + }, + { + "title": "Wilson G, Bryan J, Cranston K, Kitzes J, Nederbragt L, Teal TK (2017) Good enough practices in scientific computing. PLoS Comput Biol, 13(6): e1005510", + "link": "https://doi.org/10.1371/journal.pcbi.1005510", + "category": "General" + }, + { + "title": "The Open Science Grid is an infrastructure project to provide computing resources for Open Science projects", + "link": "https://opensciencegrid.org", + "category": "" + }, + { + "title": "List of open-source software", + "link": "http://openscience.org/software/computer-science/", + "category": "Open Methods" + }, + { + "title": "Recommendations for statistical test selection, reporting and interpretation", + "link": "https://www.usenix.org/conference/soups2025/presentation/tang", + "category": "" + }, + { + "title": "Recommendations for data management plan compliance and handling of sensitive data during research", + "link": "https://doi.org/10.1145/3706598.3713654", + "category": "" + }, + { + "title": "Datasets", + "link": "https://researchportal.hw.ac.uk/en/organisations/computer-science/datasets/", + "category": "Open Data" + }, + { + "title": "Open dataset and tools", + "link": "https://cocodataset.org/#home", + "category": "Open Data" + }, + { + "title": "Open Evidence bank", + "link": "https://www.software.ac.uk/open-evidence-bank", + "category": "Open Data" + }, + { + "title": "Computer Science resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Computer%2520Science", + "category": "Open Data" + }, + { + "title": "Research Transparency Guidelines", + "link": "https://transparency-guide.teamusec.de/", + "category": "" + }, + { + "title": "Electronic Colloquium on Computational Complexity", + "link": "https://eccc.weizmann.ac.il/eccc/", + "category": "Open Outputs" + }, + { + "title": "Preprint repository", + "link": "https://arxiv.org/", + "category": "Open Outputs" + }, + { + "title": "Database of open access conference processing, journals and repositories. open-access.network: Open Access in Computer Science", + "link": "", + "category": "Open Outputs" + }, + { + "title": "Journal of Open-Source Software", + "link": "https://joss.theoj.org/", + "category": "Open Outputs" + }, + { + "title": "CHI and SOUPS introduced mandatory open access in 2026", + "link": "https://chi2026.acm.org/authors/papers/#acm-open", + "category": "" + }, + { + "title": "CHI and SOUPS introduced mandatory open access in 2026", + "link": "https://soups.page/cfp.html", + "category": "" + }, + { + "title": "Open Data as Open Educational Resources", + "link": "http://education.okfn.org/handbooks/open-data-as-open-educational-resources/", + "category": "Open Education" + } + ] + }, + { + "name": "Computational Modelling", + "examples": "Open Methods: Nousias, Zacharaki and Moustakas (2020) present AVATREE (https://gitlab.com/LungModelling/avatree), an open-source toolbox in C++ which is a computational modelling framework that generates Anatomically Valid Airway Tree conformations that allows simulations on broncho-constriction in obstructive pulmonary conditions (https://doi.org/10.1371/journal.pone.0230259). It also allows visualisation of spatial probability maps for airway generations projected on CT imaging data and airway tree based on local structure properties. It can be used to simulate broncho-constrictions apparent in pulmonary diseases such as asthma with the aim of improving clinical decision making.", + "resources": [ + { + "title": "Open research course", + "link": "https://git.fmrib.ox.ac.uk/open-science/computational-models-course", + "category": "General" + }, + { + "title": "Standards and best practices", + "link": "https://blogs.scientificamerican.com/the-curious-wavefunction/computational-research-in-the-era-of-open-access-standards-and-best-practices/", + "category": "General" + }, + { + "title": "Introduction to computational reproducibility", + "link": "https://hal.inria.fr/hal-01358082/document", + "category": "General" + }, + { + "title": "Tips for reproducible computational workflows", + "link": "https://scicomp.aalto.fi/scicomp/zen-of-scicomp/", + "category": "General" + }, + { + "title": "The Practice of Reproducible Research, Case Studies and Lessons from the Data-Intensive Sciences", + "link": "http://www.practicereproducibleresearch.org/", + "category": "General" + }, + { + "title": "Collection of resources", + "link": "https://www.comses.net/", + "category": "Open Methods" + }, + { + "title": "Guidelines for modelling and simulation", + "link": "https://ieeexplore.ieee.org/document/8247813", + "category": "Open Methods" + }, + { + "title": "Stodden, V., Leisch, F., and Peng, R. D., editors. (2014), Implementing Reproducible Research, Boca Raton, FL: Chapman & Hall/CRC", + "link": "https://osf.io/s9tya/wiki/home/", + "category": "Open Data" + }, + { + "title": "Modeling and simulation resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/search?domains=Modeling%2520and%2520simulation", + "category": "Open Data" + }, + { + "title": "Preprint repository", + "link": "https://arxiv.org/", + "category": "Open Outputs" + } + ] + }, + { + "name": "Artificial Intelligence", + "examples": "Open Methods: “Microsoft Research [have] deployed software agents trained with natural language understanding capabilities to continuously scavenge the Web for research artifacts and, from them, extract up-to-date academic knowledge into a graph-based representation called Microsoft Academic Graph (MAG) (Sinha et al., 2015). As the records are from the entire web, MAG equalizes the discoverability of research materials made accessible by the incumbent publishers as well as by individual authors self-archiving at their own websites, potentially making policy initiatives to favour “Gold” over “Green” OA (e.g., Gibbs, 2013) less critical.” (https://doi.org/10.3389/fdata.2019.00026)", + "resources": [ + { + "title": "Implications of openness in AI", + "link": "https://www.nickbostrom.com/papers/openness.pdf", + "category": "General" + }, + { + "title": "Presentation on new tools and services in AI and open research", + "link": "https://www.stm-assoc.org/2018_12_05_STM_Week_Innovations_Jon_White.pdf", + "category": "Open Methods" + }, + { + "title": "Recommendations on how to create reproducible AI", + "link": "https://www.isi.edu/~gil/papers/gundersen-etal-aimagazine18.pdf", + "category": "Open Methods" + }, + { + "title": "Open data, tasks, and analysis scripts for machine learning", + "link": "https://www.openml.org/", + "category": "Open Methods" + }, + { + "title": "Open data, tasks, and analysis scripts for machine learning", + "link": "https://arxiv.org/pdf/1402.6013.pdf", + "category": "Open Methods" + }, + { + "title": "Open-source software and tools", + "link": "https://openai.com/", + "category": "Open Methods" + }, + { + "title": "Comprehensive list of machine learning datasets", + "link": "https://www.telusinternational.com/insights/ai-data/article/the-50-best-free-datasets-for-machine-learning", + "category": "Open Data" + }, + { + "title": "Artificial Intelligence resources (standards, databases, data policies) registered in FAIRsharing", + "link": "https://fairsharing.org/browse/subject?term=Artificial%2520Intelligence", + "category": "Open Data" + }, + { + "title": "Arxiv preprint repository", + "link": "https://arxiv.org/", + "category": "Open Outputs" + } + ] + } + ] + }, + { + "number": 6, + "name": "Meta-research", + "summary": "", + "disciplines": [ + { + "name": "Meta-research", + "examples": "", + "resources": [ + { + "title": "Meta-research methods YouTube channel", + "link": "https://www.youtube.com/@Metaresearch_methods", + "category": "General" + }, + { + "title": "Metrics to quantify reproducibility - interactive table based on findings in a scoping review", + "link": "http://rachelheyard.com/reproducibility_metrics/", + "category": "Open Methods" + }, + { + "title": "Rubin, M. (2023). Questionable Metascience Practices. Journal of Trial & Error, 4(1)", + "link": "https://doi.org/10.36850/mr4", + "category": "" + }, + { + "title": "A tutorial on methodological studies: the what, when, how and why", + "link": "https://doi.org/10.1186/s12874-020-01107-7", + "category": "" + }, + { + "title": "Guidelines for reporting meta-epidemiological methodology research", + "link": "https://doi.org/10.1136/ebmed-2017-110713", + "category": "" + }, + { + "title": "What is a meta-epidemiological study? Analysis of published literature indicated heterogeneous study designs and definitions", + "link": "https://doi.org/10.2217/cer-2019-0201", + "category": "" + }, + { + "title": "Mapping the nomenclature, methodology, and reporting of studies that review methods: a pilot methodological review", + "link": "https://doi.org/10.1186/s40814-019-0544-0", + "category": "" + }, + { + "title": "Retraction Watch via Crossref", + "link": "https://retractiondatabase.org/RetractionSearch.aspx?", + "category": "Open Data" + }, + { + "title": "Retraction Watch via Crossref", + "link": "https://openalex.org/", + "category": "Open Data" + }, + { + "title": "Retraction Watch via Crossref", + "link": "https://researchonresearch.org/project/funder-data-platform/", + "category": "Open Data" + }, + { + "title": "MetaArXiv preprint repository", + "link": "https://osf.io/preprints/metaarxiv", + "category": "Open Outputs" + }, + { + "title": "MetaArXiv preprint repository", + "link": "https://metaror.org/", + "category": "Open Outputs" + } + ] + } + ] + }, + { + "number": 7, + "name": "Methodologies", + "summary": "", + "disciplines": [ + { + "name": "Qualitative Research", + "examples": "Open Data: “The Qualitative Data Repository (QDR) is a dedicated archive for storing and sharing digital data (and accompanying documentation) generated or collected through qualitative and multi-method research in the social sciences.” (https://qdr.syr.edu)\nOpen Data: Interview transcript data, meeting transcript data. For example, “The Language Technology Group [from the University of Copenhagen] work with transcript data from the Danish Parliament. They publish their data, the Danish Parliament Corpus (2009-2017), in a FAIR (Findable, Accessible, Interoperable, Reusable) way in CLARIN-DK. Having FAIR data is essential to their field, because without freely accessible data they could not perform their research”. (https://howtofair.dk/how-to-fair/#humanities)", + "resources": [ + { + "title": "Kapiszewski, D., and Karcher, S. (2019). Transparency in Practice in Qualitative Research. PS: Political Science & Politics, 1-7", + "link": "https://doi.org/10.33774/apsa-2019-if2he-v2", + "category": "General" + }, + { + "title": "Peer Community: The Open Qualitative Research Community (Qualitopia) On LinkedIn-", + "link": "https://www.linkedin.com/groups/13344052/", + "category": "General" + }, + { + "title": "Peer Community: The Open Qualitative Research Community (Qualitopia) On LinkedIn-", + "link": "https://qualitopia.my.canva.site/", + "category": "General" + }, + { + "title": "Annotation for Transparency Inquiry (ATI)", + "link": "https://www.cambridge.org/core/services/authors/annotation-for-transparent-inquiry-ati", + "category": "General" + }, + { + "title": "Paper on qualitative methods for researching teachers’ (re)use of open educational resources", + "link": "http://oro.open.ac.uk/37408/", + "category": "General" + }, + { + "title": "Webinar on the Theory and Practice of Transparent Qualitative Health Research", + "link": "https://www.youtube.com/watch?v=DKkExQfwqpU", + "category": "General" + }, + { + "title": "Prosser, A. M. B., Hamshaw, R. J. T., Meyer, J., Bagnall, R., Blackwood, L., Huysamen, M. , Jordan, A., Vasileiou, K., & Walter, Z. (2022). When open data closes the door: A critical examination of the past, present and the potential future for open data guidelines in journals. British Journal of Social Psychology, 00, 1–17", + "link": "https://doi.org/10.1111/bjso.12576", + "category": "Ethics of Open Data in Qualitative Research" + }, + { + "title": "Prosser, A. M. B., Hamshaw, R. J. T., Meyer, J., Bagnall, R., Blackwood, L., Huysamen, M. , Jordan, A., Vasileiou, K., & Walter, Z. (2022). When open data closes the door: A critical examination of the past, present and the potential future for open data guidelines in journals. British Journal of Social Psychology, 00, 1–17", + "link": "https://doi.org/10.1177/1609406918823863", + "category": "Ethics of Open Data in Qualitative Research" + }, + { + "title": "Prosser, A. M. B., Hamshaw, R. J. T., Meyer, J., Bagnall, R., Blackwood, L., Huysamen, M. , Jordan, A., Vasileiou, K., & Walter, Z. (2022). When open data closes the door: A critical examination of the past, present and the potential future for open data guidelines in journals. British Journal of Social Psychology, 00, 1–17", + "link": "https://doi.org/10.1177/13591053231225903", + "category": "Ethics of Open Data in Qualitative Research" + }, + { + "title": "Prosser, A. M. B., Hamshaw, R. J. T., Meyer, J., Bagnall, R., Blackwood, L., Huysamen, M. , Jordan, A., Vasileiou, K., & Walter, Z. (2022). When open data closes the door: A critical examination of the past, present and the potential future for open data guidelines in journals. British Journal of Social Psychology, 00, 1–17", + "link": "https://doi.org/10.1111/spc3.12912", + "category": "Ethics of Open Data in Qualitative Research" + }, + { + "title": "Prosser, A. M. B., Hamshaw, R. J. T., Meyer, J., Bagnall, R., Blackwood, L., Huysamen, M. , Jordan, A., Vasileiou, K., & Walter, Z. (2022). When open data closes the door: A critical examination of the past, present and the potential future for open data guidelines in journals. British Journal of Social Psychology, 00, 1–17", + "link": "https://osf.io/preprints/osf/c78qu_v1", + "category": "Ethics of Open Data in Qualitative Research" + }, + { + "title": "Pre-Analysis Plans for qualitative research", + "link": "http://www.redalyc.org/pdf/324/32449207009.pdf", + "category": "Open Methods" + }, + { + "title": "Malterud, K., Siersma, V. D., and Guassora, A. D. (2015). Sample Size in Qualitative Interview Studies: Guided by Information Power. Qualitative Health Research, 26(13)", + "link": "https://doi.org/10.1177%2F1049732315617444", + "category": "Open Methods" + }, + { + "title": "Slides from UKDA presentation entitled “Sharing qualitative data: challenges and opportunities”", + "link": "https://www.ukdataservice.ac.uk/media/604758/sharingqualdata_lancu_lb_5apr2017.pdf", + "category": "Open Data" + }, + { + "title": "Chauvette, A., Schick-Makaroff, K., and Molzahn, A. E. (2019). Open data in qualitative research. International Journal of Qualitative Methods, 18", + "link": "https://doi.org/10.1177/1609406918823863", + "category": "Open Data" + }, + { + "title": "Mannheimer, S., Pienta, A., Kirilova, D., Elman, C., and Wutich, A. (2019). Qualitative data sharing: Data repositories and academic libraries as key partners in addressing challenges. American Behavioural Scientist, 63(5), 643-664", + "link": "https://doi.org/10.1177/0002764218784991", + "category": "Open Data" + }, + { + "title": "Qualitative data repository for storing and sharing digital data (and accompanying documentation) generated or collected through qualitative and multi-method research in the social sciences", + "link": "https://qdr.syr.edu/", + "category": "Open Data" + }, + { + "title": "UKDA text anonymisation tool for qualitative data sharing", + "link": "http://data-archive.ac.uk/curate/standards-tools/tools", + "category": "Open Data" + }, + { + "title": "UK dataservice list of qualitative and mixed methods data", + "link": "https://www.ukdataservice.ac.uk/get-data/key-data/qualitative-and-mixed-methods-data.aspx", + "category": "" + }, + { + "title": "Qualitative Data Repository", + "link": "https://qdr.syr.edu/", + "category": "" + }, + { + "title": "Voice, Representation, Relationships: Report of the Open Qualitative Research Working Group (2022) - From Cambridge -", + "link": "https://doi.org/10.17863/CAM.91979", + "category": "" + }, + { + "title": "Annotation for Transparent Inquiry (ATI). Tool to annotate passages in an article, to amplify the text / link to data sources", + "link": "https://qdr.syr.edu/ati", + "category": "Open Outputs" + }, + { + "title": "Mannheimer, S., Pienta, A., Kirilova, D., Elman, C., and Wutich, A. (2019). Qualitative data sharing: Data repositories and academic libraries as key partners in addressing challenges. American Behavioral Scientist, 63(5), 643-664", + "link": "https://doi.org/10.1177/0002764218784991", + "category": "Open Outputs" + }, + { + "title": "Qualitative Research Pre-registration Template", + "link": "https://osf.io/b6xmd/", + "category": "Preregistration" + }, + { + "title": "Haven, T. L., and Van Grootel, L. (2019). Preregistering qualitative research. Accountability in Research, 26 (3), 229–244", + "link": "https://doi.org/10.1080/08989621.2019.1580147", + "category": "" + }, + { + "title": "Haven, T. L., Errington, T. M., Gleditsch, K., van Grootel, L., Jacobs, A. M., Kern, F., … Mokkink, L. (2020, July 6). Preregistering Qualitative Research: A Delphi Study", + "link": "https://doi.org/10.31235/osf.io/pz9jr", + "category": "" + }, + { + "title": "Pownall, M. (2022). Is replication possible for qualitative research?", + "link": "https://doi.org/10.31234/osf.io/dwxeg", + "category": "Replication" + }, + { + "title": "Karhulahti, V. (2022). Registered reports for qualitative research. Nature Human Behaviour, 6(1), 4-5", + "link": "https://doi.org/10.1038/s41562-021-01265-8", + "category": "Registered Reports" + } + ] + }, + { + "name": "Single-Case Design (SCD)", + "examples": "Open Methods: Although publication bias has been largely reported from a non-SCD point of view, its existence is not excluded within SCD research, e.g. SCD researchers are also more likely to submit large effect manuscripts (see reference below). Currently, open research practices that aim to reduce this bias include the Single-Case Design Pilot Standards which distinguishes between well-designed and statistically effective judgements of prospective research. (Shadish, W. R., Zelinsky, N. A. M., and Vevea, J. L. (2016). A survey of publication practices of single-case design researchers when treatments have small or large effects. (Journal of Applied Behaviour Analysis, 49, 656-673. https://doi.org/10.1002/jaba.308)", + "resources": [ + { + "title": "Potential factors explaining statistical accuracy errors in SCD studies which use visual analysis. Dart, E. H., and Radley, K. C. (2017). The impact of ordinate scaling on the visual analysis of single-case data. Journal of School Psychology, 63, 105-118", + "link": "https://doi.org/10.1016/j.jsp.2017.03.008", + "category": "General" + }, + { + "title": "Transparency guide for SCD research – includes preregistration information. Cook, B. G., and Johnson, A. H. (2019). Preregistration in Single-Case Design Research. Exceptional Children, 86(1), 95-112", + "link": "https://doi.org/10.1177/0014402919868529", + "category": "General" + }, + { + "title": "Dowdy, A., Tincani, M., and Schneider, W. J. (2020). Evaluation of publication bias in response interruption and redirection: A meta‐analysis. Journal of Applied Behaviour Analysis, 9999, 1-21", + "link": "https://doi.org/10.1002/jaba.724", + "category": "General" + }, + { + "title": "Lobo, M. A., Moeyaert, M., Baraldi Cunha, A., and Babik, I. (2017). Single-Case Design, Analysis, and Quality Assessment for Intervention Research. Journal of neurologic physical therapy: JNPT, 41(3), 187–197", + "link": "https://doi.org/10.1097/NPT.0000000000000187", + "category": "Open Methods" + }, + { + "title": "Krasny-Pacini, A., and Evans, J. (2018). Single-case experimental designs to assess intervention effectiveness in rehabilitation: A practical guide. Annals of physical and rehabilitation medicine, 61(3), 164-179", + "link": "https://doi.org/10.1016/j.rehab.2017.12.002", + "category": "Open Methods" + }, + { + "title": "Johnson, A. H., and Cook, B. G. (2019, July 8). Preregistration in Single-Case Design Research", + "link": "https://doi.org/10.35542/osf.io/rmvgc", + "category": "Open Methods" + }, + { + "title": "Manolov, R., and Moeyaert, M. (2017). How can single-case data be analyzed? Software resources, tutorial, and reflections on analysis. Behavior Modification, 41(2), 179-228", + "link": "https://doi.org/10.1177/0145445516664307", + "category": "Open Data" + }, + { + "title": "Preprint repositories", + "link": "https://edarxiv.org/", + "category": "Open Outputs" + }, + { + "title": "Preprint repositories", + "link": "https://psyarxiv.com/", + "category": "Open Outputs" + } + ] + }, + { + "name": "Ethnography", + "examples": "", + "resources": [ + { + "title": "Jerolmack, C., Murphy, A. K., & Reyes, V. (2024). Ethnography in the open science and digital age: new debates, dilemmas, and issues. Frontiers in Sociology, 9, 1392012", + "link": "https://doi.org/10.3389/fsoc.2024.1392012", + "category": "General" + }, + { + "title": "Murillo, L. F. R. (2018). What Does\" Open Data\" Mean for Ethnographic Research?. American Anthropologist, 120(3), 577-582", + "link": "https://www.jstor.org/stable/45120314", + "category": "Open Data" + }, + { + "title": "Murillo, L. F. R. (2018). What Does\" Open Data\" Mean for Ethnographic Research?. American Anthropologist, 120(3), 577-582", + "link": "https://doi.org/10.3389/fsoc.2024.1308029", + "category": "Open Data" + }, + { + "title": "Murillo, L. F. R. (2018). What Does\" Open Data\" Mean for Ethnographic Research?. American Anthropologist, 120(3), 577-582", + "link": "https://doi.org/10.1177/1468794119885040", + "category": "Open Data" + }, + { + "title": "Murillo, L. F. R. (2018). What Does\" Open Data\" Mean for Ethnographic Research?. American Anthropologist, 120(3), 577-582", + "link": "https://www.ceeol.com/search/article-detail?id=1392262", + "category": "Open Data" + }, + { + "title": "Murillo, L. F. R. (2018). What Does\" Open Data\" Mean for Ethnographic Research?. American Anthropologist, 120(3), 577-582", + "link": "https://doi.org/10.1146/annurev-soc-090320-124805", + "category": "Open Data" + }, + { + "title": "Murillo, L. F. R. (2018). What Does\" Open Data\" Mean for Ethnographic Research?. American Anthropologist, 120(3), 577-582", + "link": "https://doi.org/10.5281/zenodo.4061689", + "category": "Open Data" + }, + { + "title": "Dilger, H., Pels, P., & Sleeboom-Faulkner, M. (2019). Guidelines for data management and scientific integrity in ethnography. Ethnography, 20(1), 3-7", + "link": "https://journals.sagepub.com/doi/full/10.1177/1466138118819018", + "category": "Data Management" + }, + { + "title": "Pool, R. (2017). The verification of ethnographic data. Ethnography, 18(3), 281-286", + "link": "https://doi.org/10.1177/1466138117723936", + "category": "Verification" + }, + { + "title": "Okune, A. (2020). Open ethnographic archiving as feminist, decolonizing practice. Catalyst: Feminism, Theory, Technoscience, 6(2)", + "link": "https://doi.org/10.28968/cftt.v6i2.33041", + "category": "Archiving and Infrastructure" + }, + { + "title": "Grace-McCaskey, C. A., Iatarola, B., Manda, A. K., & Etheridge, J. R. (2019). Eco-ethnography and citizen science: Lessons from within. Society & Natural Resources, 32(10), 1123-1138", + "link": "https://doi.org/10.1080/08941920.2019.1584343", + "category": "Critical Discussions on ‘Citizen Science’" + }, + { + "title": "Atkinson, P., Cataldi, S., & Wästerfors, D. (2025). For an ethics of generosity: Values for ethnography in a time of regulatory ethics. Qualitative Research, 25(2), 313-329", + "link": "https://journals.sagepub.com/doi/full/10.1177/1466138118819018", + "category": "Ethics" + }, + { + "title": "Atkinson, P., Cataldi, S., & Wästerfors, D. (2025). For an ethics of generosity: Values for ethnography in a time of regulatory ethics. Qualitative Research, 25(2), 313-329", + "link": "https://doi.org/10.1177/1077800417732090", + "category": "Ethics" + }, + { + "title": "Piqueiras, E., Stanley, E., & Laskey, A. (2023). Mitigating challenges of collaborative science through team ethnography. Journal of Organizational Ethnography, 12(2), 162-180", + "link": "https://doi.org/10.1108/JOE-06-2022-0017", + "category": "Collaborative Research" + }, + { + "title": "Piqueiras, E., Stanley, E., & Laskey, A. (2023). Mitigating challenges of collaborative science through team ethnography. Journal of Organizational Ethnography, 12(2), 162-180", + "link": "https://doi.org/10.1080/13645579.2016.1152022", + "category": "Collaborative Research" + }, + { + "title": "Pink, S., & Fors, V. (2017). Ethnography, stakeholders, and audiences: toward openness and inclusivity. Sociological Research Online, 22(4), 169-173", + "link": "https://doi.org/10.1177/1360780417746029", + "category": "Stakeholders and Audiences" + } + ] + } + ] + } + ] +} \ No newline at end of file diff --git a/layouts/disciplines/single.html b/layouts/disciplines/single.html new file mode 100644 index 00000000000..b1972216c89 --- /dev/null +++ b/layouts/disciplines/single.html @@ -0,0 +1,38 @@ +{{/* layouts/disciplines/single.html - Main layout for Open Research Across Disciplines page */}} +{{ define "main" }} + + {{ partial "disciplines/seo_jsonld.html" . }} +
+
+ + {{/* Page header */}} + {{ if .Params.image }} +
+ {{ .Params.heading_title | default .Title }} +
+ {{ end }} + +
+

{{ .Params.heading_title | default .Title }}

+ + {{ if .Params.subtitle }} +

{{ .Params.subtitle | markdownify }}

+ {{ end }} +
+
+
+ + {{/* INTRO SECTION */}} +
+
+ {{ partial "disciplines/intro.html" . }} +
+
+ + {{/* DISCIPLINES DISPLAY SECTION */}} +
+
+ {{ partial "disciplines/all_fields.html" . }} +
+
+{{ end }} diff --git a/layouts/partials/custom_js.html b/layouts/partials/custom_js.html index 2c8692a4907..ee7b8dcc214 100644 --- a/layouts/partials/custom_js.html +++ b/layouts/partials/custom_js.html @@ -2,7 +2,10 @@ {{/* Clusters page: load after DOM; defer runs before DOMContentLoaded so onReady still fires */}} {{ $isClustersPage := and .File (strings.HasPrefix .File.Path "clusters/") }} -{{ if $isClustersPage }} +{{ $isDisciplinesPage := and .File (strings.HasPrefix .File.Path "disciplines/") }} +{{ if or $isClustersPage $isDisciplinesPage }} +{{ end }} +{{ if $isClustersPage }} {{ end }} diff --git a/layouts/partials/disciplines/all_fields.html b/layouts/partials/disciplines/all_fields.html new file mode 100644 index 00000000000..46fa66d23e5 --- /dev/null +++ b/layouts/partials/disciplines/all_fields.html @@ -0,0 +1,31 @@ +{{/* all_fields.html - Render all fields from disciplines.json data */}} +{{ $data := site.Data.disciplines }} +{{ if not $data }} +
+ Data Error: disciplines.json not found. Run python3 scripts/parse_disciplines_to_json.py. +
+ {{ return }} +{{ end }} + +{{ $palette := partial "disciplines/colors.html" }} +{{ $colors := $palette.colors }} +{{ $arrowColors := $palette.arrowColors }} + +
+ + {{ partial "disciplines/controls.html" . }} + +
+ {{ partial "disciplines/sidebar_nav.html" (dict "data" $data "arrowColors" $arrowColors "link_mode" "anchor") }} + +
+ {{ range $fi, $field := $data.fields }} + {{ partial "disciplines/field_section.html" (dict "field" $field "fi" $fi "colors" $colors) }} + {{ end }} +
+
+
+ + diff --git a/layouts/partials/disciplines/colors.html b/layouts/partials/disciplines/colors.html new file mode 100644 index 00000000000..cb505a5ca78 --- /dev/null +++ b/layouts/partials/disciplines/colors.html @@ -0,0 +1,4 @@ +{{/* Shared color palettes for disciplines page — 11 fields */}} +{{ $colors := slice "#cacfdc" "#eadce6" "#d4e4d9" "#BDC5CA" "#dce4ea" "#e8ddd4" "#c9dbcb" "#d9cfe0" "#cddde3" "#e0d8cc" "#d4dce8" }} +{{ $arrowColors := slice "#6070a0" "#a05080" "#408060" "#607080" "#5080a0" "#a08060" "#509060" "#8060a0" "#5090a0" "#907050" "#6070a0" }} +{{ return dict "colors" $colors "arrowColors" $arrowColors }} diff --git a/layouts/partials/disciplines/controls.html b/layouts/partials/disciplines/controls.html new file mode 100644 index 00000000000..fb7a66f399d --- /dev/null +++ b/layouts/partials/disciplines/controls.html @@ -0,0 +1,25 @@ +{{/* Search toolbar + mobile nav toggle for disciplines page */}} +
+
+
+ + + +
+
+ +
+
+
+ + +
diff --git a/layouts/partials/disciplines/field_section.html b/layouts/partials/disciplines/field_section.html new file mode 100644 index 00000000000..c174280788e --- /dev/null +++ b/layouts/partials/disciplines/field_section.html @@ -0,0 +1,75 @@ +{{/* One field block. Expects dict: field, fi, colors */}} +{{ $field := .field }} +{{ $fi := .fi }} +{{ $colors := .colors }} +{{ $fid := printf "field-%d" (int $field.number) }} +{{ $color := index $colors (mod $fi (len $colors)) }} +{{ $totalRes := 0 }}{{ range $field.disciplines }}{{ $totalRes = add $totalRes (len .resources) }}{{ end }} + +{{/* Category badge colors */}} +{{ $catColors := dict "General" "#6c757d" "Open Data" "#17a2b8" "Open Methods" "#28a745" "Open Outputs" "#fd7e14" "Open Education" "#6f42c1" }} + +
+
+

+ {{ (int $field.number) }} + {{ $field.name }} +

+ {{ len $field.disciplines }} discipline{{ if gt (len $field.disciplines) 1 }}s{{ end }} · {{ $totalRes }} resources +
+ + {{ if $field.summary }} +

{{ $field.summary }}

+ {{ end }} + + {{ if gt (len $field.disciplines) 0 }} + + +
+ {{ range $di, $disc := $field.disciplines }} + {{ $did := printf "f%d-d%d" (int $field.number) $di }} +
+ +

{{ $disc.name }}

+ + {{ if $disc.examples }} +
+ Examples of open research practices: {{ $disc.examples }} +
+ {{ end }} + + {{ if $disc.resources }} +
    + {{ range $disc.resources }} +
  • + {{ $badgeColor := index $catColors .category | default "#6c757d" }} + {{ .category }} + {{ if .link }} + {{ .title }} + {{ else }} + {{ .title }} + {{ end }} +
    • + {{ end }} +
+ {{ else }} +

No resources listed for this discipline yet.

+ {{ end }} + +
+ {{ end }} +
+ {{ end }} +
diff --git a/layouts/partials/disciplines/intro.html b/layouts/partials/disciplines/intro.html new file mode 100644 index 00000000000..85e2321bb45 --- /dev/null +++ b/layouts/partials/disciplines/intro.html @@ -0,0 +1,19 @@ +{{/* intro.html - Intro text for Open Research Across Disciplines */}} +
+
+
+

+ Open research applies to all disciplines. If the concept of open research is new to you, it might be difficult to determine how you can apply open research practices to your research. This page provides resources and examples of open research practices relevant to your discipline. As a starting point, it may be useful to read the UK Reproducibility Network primers. +

+

+ Use the sidebar to jump to your overarching field and specific discipline. Resources are categorised into five areas: General Open Data Open Methods Open Outputs Open Education. +

+

+ "As open as possible, as closed as necessary." +

+

+ If you have resources or disciplines to add, or spot errors, please fill out this form. +

+
+
+
diff --git a/layouts/partials/disciplines/seo_jsonld.html b/layouts/partials/disciplines/seo_jsonld.html new file mode 100644 index 00000000000..dd73d44e626 --- /dev/null +++ b/layouts/partials/disciplines/seo_jsonld.html @@ -0,0 +1,20 @@ +{{/* Structured data: WebPage + ItemList for disciplines page */}} +{{ $data := site.Data.disciplines }} +{{ if not $data }}{{ return }}{{ end }} + +{{ $summary := .Params.summary | default .Description | default "FORRT open research across disciplines for educators and researchers." }} + +{{ $elements := slice }} +{{ range $i, $f := $data.fields }} + {{ $d := "" }} + {{ with $f.summary }}{{ $d = plainify . | truncate 240 "..." }}{{ end }} + {{ $item := dict "@type" "ListItem" "position" (add $i 1) "name" $f.name }} + {{ if $d }}{{ $item = merge $item (dict "description" $d) }}{{ end }} + {{ $elements = $elements | append $item }} +{{ end }} + +{{ $webpage := dict "@type" "WebPage" "@id" (printf "%s#webpage" .Permalink) "url" .Permalink "name" .Title "description" $summary "inLanguage" (site.LanguageCode | default "en-US") }} +{{ $itemlist := dict "@type" "ItemList" "@id" (printf "%s#itemlist" .Permalink) "name" "Open Research Across Disciplines" "description" "Fields and disciplines with open research resources and examples." "numberOfItems" (len $data.fields) "itemListElement" $elements }} +{{ $graph := slice $webpage $itemlist }} +{{ $root := dict "@context" "https://schema.org" "@graph" $graph }} + diff --git a/layouts/partials/disciplines/sidebar_nav.html b/layouts/partials/disciplines/sidebar_nav.html new file mode 100644 index 00000000000..c00fa1058bd --- /dev/null +++ b/layouts/partials/disciplines/sidebar_nav.html @@ -0,0 +1,35 @@ +{{/* Sidebar navigation for disciplines page */}} +{{ $data := .data }} +{{ $arrowColors := .arrowColors }} +{{ $link_mode := .link_mode | default "anchor" }} + +
+
+
Fields & Disciplines
+ +
+
diff --git a/scripts/export_disciplines_to_md.py b/scripts/export_disciplines_to_md.py new file mode 100644 index 00000000000..aab74afad82 --- /dev/null +++ b/scripts/export_disciplines_to_md.py @@ -0,0 +1,119 @@ +#!/usr/bin/env python3 +"""Export data/disciplines.json to a single editable markdown document. + +Usage: + python scripts/export_disciplines_to_md.py # writes scripts/output/disciplines.md + python scripts/export_disciplines_to_md.py -o path/to/out.md # custom path + python scripts/export_disciplines_to_md.py --stdout # print to stdout + +The output mirrors the structure of the live page so editors can review and +mark up case-study text outside Hugo (close to the prior Google Doc layout): + + # Open Research Across Disciplines + ## + + ### + **Examples of open research practices:** + #### General / Open Data / Open Methods / Open Outputs / Open Education + - [Title](link) +""" + +import argparse +import json +import os +import sys +from collections import OrderedDict + +SCRIPT_DIR = os.path.dirname(os.path.abspath(__file__)) +PROJECT_ROOT = os.path.dirname(SCRIPT_DIR) +INPUT_PATH = os.path.join(PROJECT_ROOT, "data", "disciplines.json") +DEFAULT_OUTPUT_PATH = os.path.join(SCRIPT_DIR, "output", "disciplines.md") + +CATEGORY_ORDER = ["General", "Open Data", "Open Methods", "Open Outputs", "Open Education"] + + +def group_resources_by_category(resources): + """Return an OrderedDict of category -> list[resource], categories in CATEGORY_ORDER first.""" + buckets: "OrderedDict[str, list]" = OrderedDict((c, []) for c in CATEGORY_ORDER) + for res in resources: + cat = (res.get("category") or "").strip() or "General" + buckets.setdefault(cat, []).append(res) + return OrderedDict((c, items) for c, items in buckets.items() if items) + + +def format_resource(res): + title = (res.get("title") or "").strip() + link = (res.get("link") or "").strip() + if link and title: + return f"- [{title}]({link})" + if link: + return f"- <{link}>" + return f"- {title}" if title else "" + + +def render_markdown(data): + out = ["# Open Research Across Disciplines", ""] + + for field in data.get("fields", []): + out.append(f"## {field.get('name', '').strip()}") + out.append("") + summary = (field.get("summary") or "").strip() + if summary: + out.append(summary) + out.append("") + + for disc in field.get("disciplines", []): + disc_name = (disc.get("name") or "").strip() + # Skip the implicit "discipline" that mirrors its field name (used for + # fields like "Relevant across multiple disciplines" with no children). + if disc_name and disc_name != field.get("name"): + out.append(f"### {disc_name}") + out.append("") + + examples = (disc.get("examples") or "").strip() + if examples: + out.append(f"**Examples of open research practices:** {examples}") + out.append("") + + grouped = group_resources_by_category(disc.get("resources", [])) + if not grouped: + out.append("_No resources listed for this discipline yet._") + out.append("") + continue + + for cat, items in grouped.items(): + out.append(f"#### {cat}") + out.append("") + for res in items: + line = format_resource(res) + if line: + out.append(line) + out.append("") + + return "\n".join(out).rstrip() + "\n" + + +def main(): + parser = argparse.ArgumentParser(description="Export disciplines.json to markdown") + parser.add_argument("-i", "--input", default=INPUT_PATH, help="Input disciplines.json path") + parser.add_argument("-o", "--output", default=DEFAULT_OUTPUT_PATH, help="Output markdown path") + parser.add_argument("--stdout", action="store_true", help="Print to stdout instead of writing a file") + args = parser.parse_args() + + with open(args.input) as f: + data = json.load(f) + + md = render_markdown(data) + + if args.stdout: + sys.stdout.write(md) + return + + os.makedirs(os.path.dirname(args.output), exist_ok=True) + with open(args.output, "w") as f: + f.write(md) + print(f"Wrote {args.output}") + + +if __name__ == "__main__": + main() diff --git a/scripts/parse_disciplines_gdoc.py b/scripts/parse_disciplines_gdoc.py new file mode 100644 index 00000000000..4871dae4d69 --- /dev/null +++ b/scripts/parse_disciplines_gdoc.py @@ -0,0 +1,342 @@ +#!/usr/bin/env python3 +"""Parse the "Open Research Across Disciplines" Google Doc into the disciplines spreadsheet. + +This script extracts the contents of the canonical hackathon document +(a .docx in Google Drive) and rewrites the three tabs of the disciplines +Google Sheet (Fields / Disciplines / Resources) consumed by +`parse_disciplines_to_json.py`. + +Use it when a new hackathon edition of the G-Doc replaces the previous +content wholesale. It is intentionally destructive: it clears each tab +before writing. Save a backup first if you want one. + +Expected document structure (Word/Google Docs styles): + + Heading 1 = Field name (e.g. "Natural Sciences") + Headings "Introduction" and "Contents" are ignored. + Heading 2 = Discipline name within a field (e.g. "Chemistry"). + If a field has resources but no Heading 2, a synthetic + discipline matching the field name is created. + Heading 3 = Section label ("Examples of open research practices", + "Table of resources"). Only the heading text is used + to decide what to do with subsequent paragraphs. + Paragraphs under an "Examples..." Heading 3 become the discipline's + Examples text. + Tables under a "Table of resources" Heading 3 become resource rows. + Resource tables are 2-column (category | resource) or 1-column + (resource only). Cells with multiple URLs are split into one + resource per URL, sharing the same title. + +Categories are taken from the first colon-delimited token of the +category cell ("Open Data: COS" → "Open Data"). + +Usage: + pip install python-docx + # Either point at a local .docx ... + python scripts/parse_disciplines_gdoc.py path/to/source.docx + # ... or pull from Drive via gws (requires the gws CLI configured) + python scripts/parse_disciplines_gdoc.py --drive-id + + # Add --push to overwrite the disciplines sheet after parsing. + python scripts/parse_disciplines_gdoc.py --drive-id --push + + # Inspect what *would* be written without touching the sheet: + python scripts/parse_disciplines_gdoc.py path/to/source.docx --json /tmp/parsed.json + +Sheet IDs are constants below; update them if the canonical sheet moves. +""" + +import argparse +import json +import os +import re +import subprocess +import sys +import tempfile + +from docx import Document + +# Google Sheet that drives the FORRT disciplines Hugo page. +DISCIPLINES_SHEET_ID = "1mSlduu86_nE1sY1gXobw3Pp1vI73B_0iHBsJqjtsJU4" + +# Fields whose Heading 1 we never want to import — they are document-level +# front matter, not topical fields. +SKIP_FIELDS = {"Introduction", "Contents"} + +# Fields that should appear on the public page (Show = TRUE). Others are +# kept in the sheet but hidden by the Hugo build. Adjust if scope changes. +SHOW_FIELDS = { + "Natural Sciences", + "Life, Medical and Health Sciences", + "Social Sciences", + "Humanities", + "Engineering and Technology", + "Meta-research", + "Methodologies", +} + +# A URL token: lazy match that stops at whitespace, closing brackets, or +# the start of the next URL — so two URLs concatenated without a separator +# (a common artifact when Google Docs hyperlinks are stripped) split cleanly. +URL_RE = re.compile(r"https?://[^\s)<>]+?(?=https?://|\s|$|[)<>])") + + +# ---------- docx parsing --------------------------------------------------- + + +def _clean_title(s: str) -> str: + """Collapse whitespace and trim trailing punctuation, preserving 'e.g.'-style endings.""" + t = re.sub(r"\s+", " ", s).strip() + if t.endswith(".") and not re.search(r"\b[a-z]\.[a-z]\.$", t): + t = t[:-1] + return t.strip(" \t").rstrip(":,;").strip() + + +def _resource_cell_texts(cells): + """Return (category_text, resource_text) from a 1- or 2-column resource row.""" + if len(cells) == 1: + return "", cells[0].text + return cells[0].text, cells[1].text + + +def parse_cell_resources(cat_txt: str, res_txt: str): + """Convert one resource cell into a list of {title, link, category} dicts. + + Cells frequently contain a short descriptor followed by one *or more* URLs; + we emit one resource per URL, all sharing the descriptor as the title. A + cell with no URLs becomes a single resource with an empty link. + """ + category = (cat_txt.strip().split(":", 1)[0].strip()) if cat_txt.strip() else "" + text = res_txt.strip() + + spans, urls = [], [] + for m in URL_RE.finditer(text): + spans.append((m.start(), m.end())) + urls.append(m.group(0).rstrip(".,;")) + + if not urls: + return [{"title": _clean_title(text), "link": "", "category": category}] + + # Title prefix = the non-URL text before the first URL. If empty + # (cell starts with a URL), concatenate any inter-URL text as a fallback. + prefix = _clean_title(text[: spans[0][0]]) + if not prefix: + parts, last = [], 0 + for s, e in spans: + parts.append(text[last:s]) + last = e + parts.append(text[last:]) + prefix = _clean_title(" ".join(parts)) + + return [{"title": prefix, "link": url, "category": category} for url in urls] + + +def parse_docx(path: str): + """Walk a .docx and return {"fields": [...]} in document order.""" + doc = Document(path) + fields = [] + current_field = None + current_disc = None + last_h3 = None + skip_field = False + title_table_consumed = False + + body = doc.element.body + p_idx = 0 + t_idx = 0 + + for child in body.iterchildren(): + tag = child.tag.split("}")[-1] + if tag == "p": + p = doc.paragraphs[p_idx] + p_idx += 1 + style = p.style.name if p.style else "" + txt = p.text.strip() + if not txt: + continue + if style == "Heading 1": + if txt in SKIP_FIELDS: + skip_field = True + continue + skip_field = False + current_field = { + "name": txt, "summary": "", + "disciplines": [], "field_examples": "", + } + fields.append(current_field) + current_disc = None + last_h3 = None + elif skip_field: + continue + elif style == "Heading 2": + current_disc = {"name": txt, "examples": "", "resources": []} + current_field["disciplines"].append(current_disc) + last_h3 = None + elif style == "Heading 3": + last_h3 = txt + else: + if last_h3 and "Examples" in last_h3: + target = current_disc if current_disc is not None else current_field + key = "examples" if current_disc is not None else "field_examples" + existing = target.get(key, "") + target[key] = (existing + ("\n" if existing else "") + txt) + elif tag == "tbl": + tbl = doc.tables[t_idx] + t_idx += 1 + # First table in the body is the cover page (authors, title, etc.) + if not title_table_consumed: + title_table_consumed = True + continue + if skip_field or current_field is None or len(tbl.rows) < 2: + continue + if current_disc is None: + # Field-level table — create a synthetic discipline named after the field + current_disc = { + "name": current_field["name"], + "examples": current_field.get("field_examples", ""), + "resources": [], + } + current_field["disciplines"].append(current_disc) + for row in tbl.rows[1:]: + cells = list(row.cells) + cat_txt, res_txt = _resource_cell_texts(cells) + if not res_txt.strip(): + continue + current_disc["resources"].extend(parse_cell_resources(cat_txt, res_txt)) + last_h3 = None + # other body children (sdt, sectPr) are ignored + + return {"fields": fields} + + +# ---------- sheet I/O ------------------------------------------------------ + + +def _gws(*args, body=None): + """Invoke the gws CLI, strip its keyring banner, and return parsed JSON output.""" + cmd = ["gws", *args, "--format", "json"] + if body is not None: + cmd += ["--json", json.dumps(body)] + res = subprocess.run(cmd, capture_output=True, text=True) + if res.returncode != 0: + sys.exit(f"gws failed: {' '.join(cmd)}\n{res.stderr}") + out = res.stdout.strip().split("\n") + if out and out[0].startswith("Using"): + out = out[1:] + return json.loads("\n".join(out)) if out else {} + + +def download_docx_from_drive(file_id: str, dest_path: str) -> str: + """Download a Google Drive .docx by file ID via gws and return its path.""" + print(f"Downloading docx (id={file_id}) → {dest_path}") + _gws( + "drive", "files", "get", + "--params", json.dumps({"fileId": file_id, "alt": "media"}), + "--output", dest_path, + ) + return dest_path + + +def build_sheet_payloads(data: dict): + """Convert parsed JSON into the three header+rows blocks expected by the sheet.""" + fields_rows = [["Name", "Summary", "Show"]] + for f in data["fields"]: + show = "TRUE" if f["name"] in SHOW_FIELDS else "FALSE" + fields_rows.append([f["name"], (f.get("summary") or "").strip(), show]) + + disc_rows = [["Field", "Discipline", "Examples"]] + for f in data["fields"]: + for d in f["disciplines"]: + disc_rows.append([f["name"], d["name"], (d.get("examples") or "").strip()]) + + res_rows = [["Discipline", "Title", "Link", "Category"]] + for f in data["fields"]: + for d in f["disciplines"]: + for r in d["resources"]: + res_rows.append([d["name"], r["title"], r.get("link", ""), r.get("category", "")]) + + return fields_rows, disc_rows, res_rows + + +def push_to_sheet(spreadsheet_id: str, payloads): + """Clear and rewrite the Fields / Disciplines / Resources tabs.""" + tabs = [("Fields", payloads[0]), ("Disciplines", payloads[1]), ("Resources", payloads[2])] + for tab, rows in tabs: + print(f"Clearing {tab}…") + _gws( + "sheets", "spreadsheets", "values", "clear", + "--params", json.dumps({"spreadsheetId": spreadsheet_id, "range": tab}), + ) + print(f"Writing {len(rows)} rows to {tab}…") + result = _gws( + "sheets", "spreadsheets", "values", "update", + "--params", json.dumps({ + "spreadsheetId": spreadsheet_id, "range": tab, "valueInputOption": "RAW", + }), + body={"values": rows}, + ) + print(f" updatedRange={result.get('updatedRange')} rows={result.get('updatedRows')}") + + +# ---------- CLI ------------------------------------------------------------ + + +def print_stats(data: dict) -> None: + total_disc = total_res = 0 + for f in data["fields"]: + n_disc = len(f["disciplines"]) + n_res = sum(len(d["resources"]) for d in f["disciplines"]) + total_disc += n_disc + total_res += n_res + print(f" {f['name']:<55} disciplines={n_disc:2d} resources={n_res:4d}") + print(f"Total: {len(data['fields'])} fields, {total_disc} disciplines, {total_res} resources") + + +def main(): + parser = argparse.ArgumentParser(description=__doc__.splitlines()[0]) + src = parser.add_mutually_exclusive_group(required=True) + src.add_argument("docx_path", nargs="?", help="Local .docx file to parse") + src.add_argument("--drive-id", help="Google Drive file ID of the .docx") + parser.add_argument( + "--json", default=None, + help="Optional path to write parsed JSON (for review). Default: skip.", + ) + parser.add_argument( + "--push", action="store_true", + help="Clear and rewrite the disciplines spreadsheet from the parsed content.", + ) + parser.add_argument( + "--spreadsheet-id", default=DISCIPLINES_SHEET_ID, + help="Override the target spreadsheet ID.", + ) + args = parser.parse_args() + + if args.drive_id: + tmp = tempfile.NamedTemporaryFile(suffix=".docx", delete=False) + tmp.close() + docx_path = download_docx_from_drive(args.drive_id, tmp.name) + else: + docx_path = args.docx_path + if not os.path.exists(docx_path): + sys.exit(f"Input file not found: {docx_path}") + + print(f"Parsing {docx_path}…") + data = parse_docx(docx_path) + print_stats(data) + + if args.json: + with open(args.json, "w") as f: + json.dump(data, f, indent=2, ensure_ascii=False) + print(f"Wrote parsed JSON → {args.json}") + + if args.push: + payloads = build_sheet_payloads(data) + push_to_sheet(args.spreadsheet_id, payloads) + print("Sheet updated. Now run `python3 scripts/parse_disciplines_to_json.py` " + "to refresh data/disciplines.json.") + else: + print("\n--push not set — sheet was not modified.") + + +if __name__ == "__main__": + main() diff --git a/scripts/parse_disciplines_to_json.py b/scripts/parse_disciplines_to_json.py new file mode 100644 index 00000000000..9ce7bcc5b4e --- /dev/null +++ b/scripts/parse_disciplines_to_json.py @@ -0,0 +1,190 @@ +#!/usr/bin/env python3 +"""Fetch FORRT Open Research Across Disciplines data from Google Sheets and export Hugo JSON. + +Usage: + python parse_disciplines_to_json.py # Full run (fetch + export) + python parse_disciplines_to_json.py --dry-run # Fetch + print stats, no file write + python parse_disciplines_to_json.py --from-cache # Use cached /tmp files instead of fetching + +Data sources (Google Sheet 1mSlduu86_nE1sY1gXobw3Pp1vI73B_0iHBsJqjtsJU4): + - Fields: top-level groupings (Name, Summary) + - Disciplines: disciplines within fields (Field, Discipline, Examples) + - Resources: per-discipline resources (Discipline, Title, Link, Category) +""" + +import argparse +import json +import os +import subprocess +import sys + +SHEET_ID = "1mSlduu86_nE1sY1gXobw3Pp1vI73B_0iHBsJqjtsJU4" +SCRIPT_DIR = os.path.dirname(os.path.abspath(__file__)) +PROJECT_ROOT = os.path.dirname(SCRIPT_DIR) +OUTPUT_PATH = os.path.join(PROJECT_ROOT, "data", "disciplines.json") + +CACHE_DIR = "/tmp/forrt_disciplines_cache" + + +def fetch_sheet(sheet_name: str, use_cache: bool = False) -> list[list[str]]: + """Fetch a sheet tab via gws CLI; returns list of rows (each a list of strings).""" + cache_path = os.path.join(CACHE_DIR, f"{sheet_name}.json") + + if use_cache and os.path.exists(cache_path): + print(f" Using cached {sheet_name} from {cache_path}") + with open(cache_path) as f: + return json.load(f) + + print(f" Fetching sheet '{sheet_name}' via gws ...") + result = subprocess.run( + [ + "gws", "sheets", "spreadsheets", "values", "get", + "--params", json.dumps({"spreadsheetId": SHEET_ID, "range": sheet_name}), + "--format", "json", + ], + capture_output=True, text=True, + ) + if result.returncode != 0: + print(f"ERROR fetching {sheet_name}: {result.stderr}", file=sys.stderr) + sys.exit(1) + + # gws may print "Using keyring backend: keyring" before the JSON + raw = result.stdout.strip() + lines = raw.split("\n") + if lines[0].startswith("Using"): + raw = "\n".join(lines[1:]) + + data = json.loads(raw) + rows = data.get("values", []) + + os.makedirs(CACHE_DIR, exist_ok=True) + with open(cache_path, "w") as f: + json.dump(rows, f) + + return rows + + +def _truthy(val: str) -> bool: + """Spreadsheet-style truthiness: TRUE/YES/1 are true; empty defaults to true.""" + if val is None: + return True + s = str(val).strip().lower() + if s == "": + return True + return s in {"true", "yes", "y", "1", "t"} + + +def build_json(fields_rows, disciplines_rows, resources_rows) -> dict: + """Build the disciplines.json structure from sheet data.""" + + # Locate optional "Show" column on the Fields header (case-insensitive). + header = [str(c).strip().lower() for c in (fields_rows[0] if fields_rows else [])] + show_idx = next( + (i for i, h in enumerate(header) if h in {"show", "visible", "publish"}), + None, + ) + + # Parse Fields (skip header) + fields_list = [] + for row in fields_rows[1:]: + name = row[0] if len(row) > 0 else "" + summary = row[1] if len(row) > 1 else "" + show = _truthy(row[show_idx]) if show_idx is not None and show_idx < len(row) else True + if not show: + continue + fields_list.append({"name": name, "summary": summary}) + + # Parse Disciplines (skip header) — group by field + disc_by_field: dict[str, list[dict]] = {} + for row in disciplines_rows[1:]: + field_name = row[0] if len(row) > 0 else "" + disc_name = row[1] if len(row) > 1 else "" + examples = row[2] if len(row) > 2 else "" + disc_by_field.setdefault(field_name, []).append({ + "name": disc_name, + "examples": examples, + }) + + # Parse Resources (skip header) — group by discipline + res_by_disc: dict[str, list[dict]] = {} + for row in resources_rows[1:]: + disc_name = row[0] if len(row) > 0 else "" + title = row[1] if len(row) > 1 else "" + link = row[2] if len(row) > 2 else "" + category = row[3] if len(row) > 3 else "" + res_by_disc.setdefault(disc_name, []).append({ + "title": title, + "link": link, + "category": category, + }) + + # Assemble final structure + output_fields = [] + for i, field_info in enumerate(fields_list): + fname = field_info["name"] + + # Get disciplines for this field + discs = disc_by_field.get(fname, []) + + # For fields with no explicit disciplines entry (e.g. "Relevant across + # multiple disciplines"), create a single implicit discipline + if not discs: + discs = [{"name": fname, "examples": ""}] + + # Attach resources to each discipline + for disc in discs: + disc["resources"] = res_by_disc.get(disc["name"], []) + + output_fields.append({ + "number": i + 1, + "name": fname, + "summary": field_info["summary"], + "disciplines": discs, + }) + + return {"fields": output_fields} + + +def print_stats(data: dict): + total_disc = 0 + total_res = 0 + for field in data["fields"]: + n_disc = len(field["disciplines"]) + n_res = sum(len(d["resources"]) for d in field["disciplines"]) + total_disc += n_disc + total_res += n_res + print(f" Field {field['number']:2d}: {field['name']:<50s} " + f"({n_disc} disciplines, {n_res} resources)") + print(f"\n Total: {len(data['fields'])} fields, {total_disc} disciplines, {total_res} resources") + + +def main(): + parser = argparse.ArgumentParser(description="Build disciplines.json for Hugo") + parser.add_argument("--dry-run", action="store_true", help="Print stats only, don't write JSON") + parser.add_argument("--from-cache", action="store_true", help="Use cached sheet data from /tmp") + args = parser.parse_args() + + print("Fetching sheet data ...") + fields_rows = fetch_sheet("Fields", use_cache=args.from_cache) + disciplines_rows = fetch_sheet("Disciplines", use_cache=args.from_cache) + resources_rows = fetch_sheet("Resources", use_cache=args.from_cache) + + print(f" Fields: {len(fields_rows) - 1} rows, " + f"Disciplines: {len(disciplines_rows) - 1} rows, " + f"Resources: {len(resources_rows) - 1} rows") + + print("\nBuilding JSON ...") + data = build_json(fields_rows, disciplines_rows, resources_rows) + print_stats(data) + + if args.dry_run: + print("\n[dry-run] No file written.") + return + + with open(OUTPUT_PATH, "w") as f: + json.dump(data, f, indent=2, ensure_ascii=False) + print(f"\nWrote {OUTPUT_PATH}") + + +if __name__ == "__main__": + main()